Array 1 279638-279214 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCJ01000001.1 Clostridium neonatale strain LCDC 99A005 Cneo_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 279637 30 96.7 34 ............T................. AAAACTCGTAAATTTCTATTTGCTTTCTACTATC 279573 30 100.0 36 .............................. ACTTTTGCATTAGTTTGGGAAATATCAAAAACATAT 279507 30 100.0 36 .............................. TCTATAAGACCACTTTCAAAATCATGTGAGCGTTTC 279441 30 100.0 36 .............................. ATATATAATACAATTGCCTATTTAATTTTAGGTACT 279375 30 100.0 36 .............................. AAATGCTGAAGAAGTCTCTTTATTAAAAGAATATGC 279309 30 96.7 36 ...............T.............. TGTGTATATCCCTTATCTATTGGATTATTAGTAGTA 279243 30 70.0 0 ......T.....T..A..TA.A..AA...C | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 94.8 36 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : ATCTGATAAATTTATTTGCGCCAAAAATGCCATTGCTTTTCCCTCATTATCCAAAGGATAATCTTCAATACATTCTAAATATGGACATCCTCCCAATTTACTATCCCAAGGTTTAGTCTCTTCAATTTTAAATGTTATTTCATTACTATACCTAGTATTCTCCATGATAATAGCTTCATGCTCTTTTAAAATCTCAGGAATCTCATATTTAATCATCACATCAACCCTCCAAATGAATATTTATTTCTATGCTAATTATAACATATCTTGTAAATAAAACATTATCCATAATCTAAATAGACCTGATCATTTCATTAATTATTTACCAGGCCATTTATTTACTTTTCTGTTTAAATTAGAGTGACAAAGCCACTTTAAGCACTTTCCTCTATTGCTTGCATCAATATATAATTTCGTTGGTAAATTTTTAAAGAATATGCTACTATAGTCATATACAGAGAATTGCTGAATTTAAAAATGGCTTATTTGCGTTGGATTAA # Right flank : TTTAGTTAAGTCACCCAAAGTTTTTATTCTACTTATATCCAGGTAAATACGTAATATTTTTGCCACTATCCTCAGATATAGTTAATTTAGACAATTACCAAGTAAAAACACCCAAAAACCAAATAAAACAATAATTAGATAAATCTAGTAATTTTACTTGATCGTATTTCTACAGACTCATATATTAAATCATTTTATTTATCTATTTTTGCATATTTTTTCAATATTGCACTGAATTTTATTAAATAATTAATTCCCCAAAAGATTAATATAAAAAACAATAGACATAAACTTGAATTATATTTATCCCAAAAATAAATTACTATAGATACAAGTATAGCATTTAAGCAACTAAAGAATAATTGCATTTTAAAAAATTTATCATTAACTATAATAAAATTCTTATCCTTTATTGTGTAAATAACTTTTTTATTAAAATAGTAAATAATATTATAAATAACAAATAATATTGGCATAATTACACCACATATAATAAATAG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 2205711-2204045 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCJ01000001.1 Clostridium neonatale strain LCDC 99A005 Cneo_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2205710 30 100.0 35 .............................. CAATCAAAATATTCCTTAAACTCTCTTTGAACTTT 2205645 30 100.0 35 .............................. CTCAATGTTGATTGAGATAAGTTTGCTTCTTTGCA 2205580 30 100.0 37 .............................. AATGATTCATGCTCCACAAACTGGGGACGTTGTTAAG 2205513 30 100.0 35 .............................. GAATCAGAGAGATTAGGATTAGACCATGTTCCTTA 2205448 30 100.0 36 .............................. TGAAGATAATAAAGCCTTAATTGATGGTGAATTAGT 2205382 30 100.0 37 .............................. TTGAGAAAATTAGCTGAACAATGGGGATGGAGTACAA 2205315 30 100.0 36 .............................. CTGCTATTGGAATAAGTGTAGGTAGTTGCACACCTA 2205249 30 100.0 35 .............................. ACAATATAAGGTTCATCTTCAATCACAAATTTTTG 2205184 30 100.0 36 .............................. AACTATATTTCCTTACATTAAGCAATATGTTATGGA 2205118 30 100.0 36 .............................. GAAAAAGAACAATGGATTTCTAAAGAAGATACAGGA 2205052 30 100.0 36 .............................. AAAGGTTTATTAGCTGCATATATTACTATTTCATAA 2204986 30 100.0 34 .............................. AATAGTTGCGAACACATATTCGCATGTGGTATAA 2204922 30 100.0 34 .............................. AATGTGTATAGCAATGCCAATAGTGGTTCTAATA 2204858 30 100.0 35 .............................. TTATAATTAATCTGAATGTCACCGACTTTAATGGA 2204793 30 100.0 36 .............................. AATATAAAATCCCCAAGAGATGTTGAAAAATATGTT 2204727 30 100.0 36 .............................. TCATTAGCCAATTCCTTTAGAGATGATACAAGCTTT 2204661 30 100.0 34 .............................. TCTAAAACACCTTTTTGTCTTAATAATTTAATAG 2204597 30 100.0 34 .............................. TGGATTGGAAGATATAGACGAGGTGGAAGAAAAT 2204533 30 100.0 37 .............................. TATCATTAAACTTAGAAATAAAATCCATAGGTATTCC 2204466 30 100.0 34 .............................. AGGTATTATTTCAAAAGATCTGTGGAATGAATGT 2204402 30 100.0 36 .............................. TCTTTTCTTCTATAGGTTAGGGAATAAACACCTTTA 2204336 30 100.0 35 .............................. ACTTTAAGTGATTGGAAGAAAGGCCGTAGTACTCC 2204271 30 100.0 36 .............................. TTAGCCATATCCCACATTTCATAATGTACTGGTGCA 2204205 30 100.0 36 .............................. ACAGGAGATTTTAAACGGATTTGAAGCGTAAGGAGG 2204139 30 100.0 35 .............................. ACCAGCTCAAAGCCTGTATAAACAAATGGCGTTTC 2204074 30 93.3 0 .................A..........T. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 99.7 35 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : GAATTTGTTCCCTTCAGTTTAAAGGAGGGGATGTAGTGGGAAAAGTAACGAACTATAATTATGCATTTGTATTTTATGATGTTAATGAAAAAAGAGTTCAAAGAGTGTTTAAGGTTTGTAAGAAATACTTATCACATTTTCAAAAATCAGTCTTTAGGGGAGAAATGTCGCCGTCAAAATTAATTAGATTCAAAACAGAATTAAATAAAGTAATAGATAAAAATGAAGATTTTGTTTGTATAATAAAGCTTATGAATGATAATGTATTTGGTGAAGAAGTACTTGGATGTTCAGCCAATAATACAGGAGAAGATTTAATAATATAAATTTACCAGGTAGAAATTTTAGCTATCTTTGTTAAAGCTAGAAATGATGGGATATTTGATAGTTTTAACATATTTTTATCAGAAAAACTTCATTCCTTGGTAAATTTTTGGTGATGTGGTATTATTACTAGTATAGGGGAATTTTTGAAGTTTAAGAATGCCTAAATCGCGTTG # Right flank : TATAGAGTACGGAAAAGATTATTTTAATTTCTATATTTATTAAAAGAATTCGGAACAAAAAGATATATATTTTTAAAGATATGCTATGATATGCTTATATATAAAAAAATATTAAATAAAGTGAGGCCAGTTAAAAGGTTTATTTTTGACTGGTTTTACTTTATTTAAATTAATCTAATATAGCTATGATTTTAATATCTAAATTAGCTGGTTTTAGTATTTTTATGGTGATTATTATTTTATTCAGATAAGTCAATGGCAGATTTACAAAAGCAGCAGATTTTTAAAACGTAAAAATAATAAATTTATATTAAATAAAACATAAATTTTTTGAAAAGAATAAGTTAAGAAATAAAAATAACATTATGATTTATTTTTAATTTAATGTTAAACTTATATTAAGTATGGAAAATTTAGAAATATTTAAGGAGTAATTTATTATGAAGGATTCAACTCACAGAATAGCTATTCCTTCTATCTTAGAAGTTGGAAAAGGAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 2231768-2232711 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCJ01000001.1 Clostridium neonatale strain LCDC 99A005 Cneo_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2231768 30 100.0 36 .............................. TAAGTATTGGTATCCAGTTCAATATAAAAGATGGCA 2231834 30 100.0 35 .............................. TCAAAAAATTCAGGAATTTCACAAACTACACTGTG 2231899 30 100.0 34 .............................. ATTTACAGTGAACTGTAATGCATCAGTTACTACT 2231963 30 100.0 36 .............................. TTCATATTTTTGCAGATGAATTTGCTAATATAGGCA 2232029 30 100.0 35 .............................. CCTTAAACCCTCCTAACTATTAACTAATGCTAAAC 2232094 30 100.0 35 .............................. GGGACTTTTGCGATAGGTTGTTTACTAATAAGGTT 2232159 30 100.0 36 .............................. GAGTGTTCTTCAAAAGTATATAGATATAGCTTTCGC 2232225 30 100.0 36 .............................. TATGGGAAAATGTAAAAAATGTTTTATCTAAGCACA 2232291 30 100.0 36 .............................. CAATAGAAAAATAGTTTACAAAGATATTTCTTACGC 2232357 30 100.0 36 .............................. TTAGCTCTATCAAACATTTCAAAAGCCATTAGGTAC 2232423 30 100.0 34 .............................. ACAATGACTTTCAAGGAGCCATAAATTTTAAAAA 2232487 30 100.0 36 .............................. AAGGGTGGTCGCTCGGTTTAGATGGAACGCACTTAC 2232553 30 100.0 36 .............................. CAACCTCTTCCTTGTTATTATAATACCTATTATTTA 2232619 30 100.0 33 .............................. AGGATTAACAATTCTCTTAAGTGGAGCATCTGT 2232682 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 15 30 100.0 35 ATTTAAATACATCTCATGTTAATCTTAATC # Left flank : TACGCTTTGAATAATATTCAGGTATCTTATACGAATTGTGACACTCAATAACATTTTTAATTAACTCATCTTCACTTGTATCTTCAATGAATTCTCTTATTTTACCCTCTTCAAATAAAATCTCTACCCCAAGCCTAGCATGATCAATTGACTTAGAATCATTAAATGTTCCATATCTTCTTACCTGTTCAAATCTTCCTATATCATGTAGCAGTCCAGTAAGCCATGCAATATCAATTTCTTCATTTGTCATCTCTAAGCTTGATGCTATTTTTTCACATAGTTCACTTACACGATATGTATGATCTATTTTTAATTTTATCTTTTCATTGCTGGTATCATACTTCTCAACATAATCATTAAATACTTTTTTAGATTTAATTTTGTCTATATACATCTTGCAGACTCCTTTATTTTTATAAAAAATCCTTTTGTATTATAAAGCCATTAGTTTTATATTTTTAATATTTTACATAATAATTAGAAAGCTATTTAATCAT # Right flank : CCTTAGAAAAATAGCCATTCTAAAAATAAAAGAATTCTTCTATCCAAGAAATAACGCTATTCTTCAAAAAATTTACCAAGTGTTTTCTATTTTTTCATTTTTATTATAATGAACTCAGATAAAGTCACTATTGTTGCAGTGTTTTACCTAATTATAAATTAAAATTACCTGGTAAATACAATGTATACTTTAATAAAACATCAATGATTATTTCACAAGCTTTTATTTTTATGGGCAATGTTTTGCTTCACATGCTTTATATCCTGCTGCTTGTGCTTTTGATCTGCTCATAGCTGTTGAATTTTTCATTCCATGAGCATTTGCTGTATTATGATATATTCCTTTGCTAGATACATAAACTGTATCTGATGCATTCTTTACAACTCCACTTGAAACATCATTATTATCAATAGTTGAGGGTGTATTTACACTAGTATTTTGTATTTGAGCTGGAACACTTGTTGTCCATGCACCGTTGCTATTTAAATAATATCCTTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATCTTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //