Array 1 1-1211 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQN01000015.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1599c x_contig000015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1 30 100.0 37 .............................. CTAGTGAAAAAAGCAAGGACGAAACAGAAAGACTAGA 68 30 100.0 34 .............................. ATATCACTAGCCCCGTCCCTTAAGCCTTTTTGAG 132 30 100.0 33 .............................. CGTTTTCATAAATACTGCTTAAGCACTCGTTTA 195 30 100.0 34 .............................. TTTCAAACTCTTTATAGCCTTTTGATAGCTCTTT 259 30 100.0 36 .............................. ATCTTCTTCGCTTAAAGCTATCTTTAGATACATTTT 325 30 100.0 34 .............................. GCTACCGTATATTCAGTTGAGTTTGAAACACCAG 389 30 100.0 36 .............................. CAAATTTGAAGATTTTCAGTAATTCATTGCAAGAAC 455 30 100.0 34 .............................. TTAAATTAAATACGCTTGAGTTAGCTAATGAGAT 519 30 100.0 36 .............................. AAATATCACGACCGCTTTTGATACCGCTACACTTTA 585 30 100.0 37 .............................. TCAAACTACAACACAAACTTTGAAAAAAGAACGGTTG 652 30 100.0 38 .............................. GATACAGTTATTATGTCGCCTTTAAAAACCGGAGCAAA 720 30 100.0 35 .............................. GCTATACTAGGGCTTGATTTTCTAGTCTAGGAAAA 785 30 100.0 38 .............................. CTTTTAAGAGCTTTTAGGCGTAGAACGCCCGCAAGCTC 853 30 100.0 35 .............................. GGTTATTAGCTATACAGGCTCACCGCAAGATTTCG 918 30 100.0 36 .............................. ATACCACGCCGAATTACTAGCGTAAGCATTTATCCC 984 30 100.0 36 .............................. TGGGCGATCGCCGTCTGGTTGCCAGTGAAAGTTAAA 1050 30 100.0 36 .............................. AAGATACAAGCGAACTAATAGGTGATTATACAAATA 1116 30 100.0 36 .............................. TGAACGACAAGATCAGTCTATGGGCGAAAATATTTT 1182 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : | # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 32-192 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQN01000034.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1599c x_contig000035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 32 30 100.0 36 .............................. TGAACGACAAGATCAGTCTATGGGCGAAAATATTTT 98 30 100.0 35 .............................. CTCGCAACTCTCGTAGTTGCACCTCCTGGAAGCGG 163 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : ACAAGCGAACTAATAGGTGATTATACAAATAG # Right flank : AGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 1894-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQN01000008.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1599c x_contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1893 30 96.7 37 ....A......................... CGTTCGCTTGTCGTACCTTGGCGGATTAAACTATAAT 1826 30 100.0 37 .............................. CGCATACTCCTCTTAAAATATATGAAAATGGAACATA 1759 30 100.0 36 .............................. TGAAGCAAGGGTAAATAGTGGCTGGAAGAAAGACTA 1693 30 100.0 37 .............................. CCGAGATAGACGATGGCGATGAAGTCATCTGCGACCC 1626 30 100.0 34 .............................. TTTTTCTCAGGTTTAGGAATACCATATGAAGCTT 1562 30 100.0 35 .............................. ATGCTCAAAAGATAACAGCTTGGATAGCCAAATAG 1497 30 100.0 33 .............................. GGTTTTTTCCGCCCCAATTATCAGTTACATCAG 1434 30 96.7 35 .............C................ ACAACTTCCTCAAACTATAGAAGATATAAAAATAG 1369 30 100.0 36 .............................. GCTTTTAGAAGTTTTTAGGGCGTCTTCTAAAAGAAC 1303 30 100.0 36 .............................. AGAGTTCATAGATATGACTTTTCGAGAGTATGATAA 1237 30 100.0 36 .............................. AGGCAATTATTTAAAAGTATTCTCATCAAGCAGTGA 1171 30 100.0 35 .............................. AATAGACTTATTAGGCTCTATTCGGTTATTTCTAT 1106 30 100.0 34 .............................. CCTAGCGTTCAAAGTGTAGTTTTAAGCGACGGGG 1042 30 100.0 39 .............................. TATATATCAACATAGAAAAAGCTTCACGTTTAGAGCAAC 973 30 100.0 33 .............................. CGTTTTCATAAATACTGCTTAAGCACTCGTTTA 910 30 100.0 36 .............................. GCAGTGGAAGCGCACTGATAAAAATGGGTATAGATA 844 30 100.0 36 .............................. TATAGTTGCAAAAATTAGAAAAAATATTTGAAACAC 778 30 100.0 35 .............................. GAATTTCGCTCAAAGTTTCTTTTGCAGTTTGGTCA 713 30 100.0 33 .............................. TAGAGAGAAGCAAAGCGTAGGTCTTTTAGCAAA 650 30 100.0 34 .............................. TTTTTTGAACTCTTTGAATGTTCTGCTGATAATG 586 30 100.0 37 .............................. CGTCCTCCATATACAACCTTATAGCGGATATTTTCAG 519 30 100.0 35 .............................. AGAAAAAACAGACTTTCTCACAAAGCCAAGAGTTA 454 30 100.0 37 .............................. GAGCAAGTGATAGCGATCTATTATTTAGACTCACAAG 387 30 100.0 37 .............................. TCGTATACTTTAGCGAGTTTGATTTAGATACCGCGGT 320 30 100.0 35 .............................. CATTAGAAATCGTCCAGCAAGCTTGTCAGCTGAGA 255 30 100.0 34 .............................. GTCAGGCGCGTATTCTATTATCAAGCCTAAATGA 191 30 100.0 34 .............................. ATCCAAAAGTTTTTTCAGCCAATCTATTTCTTAC 127 30 100.0 37 .............................. CTAGTGAAAAAAGCAAGGACGAAACAGAAAGACTAGA 60 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 29 30 99.8 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : AGCTATTAGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGGTAAGCTCCAAATCCTAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGATTTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGTATCAGTTTTGCCAGTGTAAGGCTTTGAGCAGCTAAAATCAAAATGGCAGTTAAGTCTCATTAAAATAATAACCAAAATAAAAAGAATAAAACTAAACATCTACAAGCCTTTTTCTAAAAAGTATAACATAAAGGATTAAATATGGCAAATCCTACTCTAACCTTTGGAGTTGATTTAAGTGAGTTTAATAGTGCTTTTAATAAAATCAACAAAACAGCCACTACTCTAAGTGATGCCTTAGACAAAAATATCAAAACAGCTACAACTGCGATAAAAAATGCAAATCACAAAAA # Right flank : CATATCACTAGCCCCGTCCCTTAAGCCTTTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //