Array 1 58326-59025 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFH010000002.1 Enterococcus faecalis strain SCPM-O-B-8938 NODE_2_length_383977_cov_52.825734, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 58326 37 100.0 29 ..................................... ATGCCGCTTAGAAGCCATGTTAGAGCATG 58392 37 100.0 29 ..................................... ATTACAGCGACGTAATTACGCTAACGGCT 58458 37 97.3 29 ....................................G GCGCCGTTATCCGTTCCTAGAACGCTATT 58524 37 100.0 29 ..................................... TTACAACCCCCTTTTTAACTTATTGCCAT 58590 37 97.3 29 ....................................T TAAAATTAAAACAGAAATTAAAACAGAAG 58656 37 97.3 29 ....................................G ACACCGTCTGGAAGTGTACCATGGAGGGT 58722 37 97.3 29 ....................................C CTATTATAATTAGTAGGGGTATCATGATC 58788 37 97.3 29 ....................................T CTAGAAGAATATAGAGCTACTAAAAACAA 58854 37 97.3 29 ....................................C GAAGATGGGAACAAGCTTTCTGGCGCATT 58920 37 100.0 29 ..................................... CCAGAAAGAGTTTTACGATACTATGATGA 58986 37 75.7 0 ......T..C.........A.A...AC..T..CC... | A,AA [59005,59012] ========== ====== ====== ====== ===================================== ============================= ================== 11 37 96.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : GTATATCCTTATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCTCAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAATAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAATTCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAAATAATTCTCCGAG # Right flank : AAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAATCCAATTTGCGATGACAACAGTTTTCCACTTTTTCTTCGTACCGTTTTCAATAGGATTAGCACTTGTTG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 302655-303745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFH010000002.1 Enterococcus faecalis strain SCPM-O-B-8938 NODE_2_length_383977_cov_52.825734, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 302655 36 100.0 30 .................................... TCTTGTTAGCGCCGGTCTTTGCACGGGCTT 302721 36 100.0 30 .................................... TCGATTTTTTGCAAGTGTTTTGACACGTTC 302787 36 100.0 30 .................................... AAATTCTAGTGCAAAAATTACGAGCTAAGG 302853 36 100.0 30 .................................... CACTCACTTCGATTTTTCCGTCAACTGCTG 302919 36 100.0 29 .................................... AAGCTACAAATAAAGCTTTGCTAGAATAC 302984 36 100.0 30 .................................... TTGGTCTTTTAAACTACTACACACAGGTAA 303050 36 100.0 30 .................................... AAATTTATTCGAAATCATTTTCTTTAACTC 303116 36 100.0 30 .................................... TATCAGTCCATTGTCCTAAACCTAAGCCTC 303182 36 100.0 30 .................................... TCCTCACTGATACAGTTTCGTTGTGCCGCT 303248 36 100.0 30 .................................... ACACCCCTCGTGTTATAATTGATTTGCATT 303314 36 100.0 30 .................................... ATAACCTGTTGATTTCGATATTCTAATGTG 303380 36 100.0 30 .................................... GCTCCATAAGTTCCTACCATTCCATTTGCA 303446 36 100.0 30 .................................... TTATTCGAGTGTGCCTAGCCTAAAAGCAGA 303512 36 100.0 30 .................................... TTATTCGAGTGTGCCTAGCCTAAAAGCAGA 303578 36 100.0 30 .................................... TATAGGGTTAGAGTATGTAATTCACTACGT 303644 36 100.0 30 .................................... TTAGCGGTATTTTCTTGCGAAGCAGGCATA 303710 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 31 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : ATTTATTATCTCTTTCAGCAGCTAAAGAAATTGGCTCAAGAAACAAAGCAGTTGAAGTTTTTTATTTTTAGTAATAGAAGCTTGCCTTTACCGTATACGGAGGAAGATGTTGAGAAAACGATTTTGTTATATGATAAGTATCAGCAGTTGCCAGTTTTTGATGTTTTTCGTCAAAGTATTGAGCGACATTATCCAGATCAACTCTCTTGGACAAATCAACAACTAATTGATGCTTTTTATCGAGTCTGTCATTTTGTTGGTGATCAGTATACAAAAAATTATCTTTTACCTAAAGATATGATATTATTAAAATTGTTGAAGGAATTGTTAGACGACAATAGTGAGTGTGTCGAGACGTCGATGGAAAAGCTCACTGTATTGGAAGAACAATATTTTCGCGAACGGTTATTGCGGAAAGAGTGAGTCTGGAATTTTAACCGCGTAAAGTTATATTTTTTATCAAAAGGATTATTAATGAGATTTCAAATTTTAAATTTGAG # Right flank : CCATTACCTATGAACTAGCTTCTGACGTTTAGTTTTTACACCCCAAATAATTTTCAAAAAAGCCATCCCCACTAAATTTTTAAATATAGTCATCTTTCTAGCATAATTATTTGTATCTGAAGCAACAGCCAAATTGGCTTCTTCAGATACTTTTTGTTATTTAATTTAAGAGTTTTCTCAGTTGTACCAACAAATTGATAACTTATAATTTTCAAGTCCTACATATAATGGTAAAATAGAATAGATTGAAATTAATTGGAGGAATAATGAATCGATGAAAAAAAGATTGCTATTATTTATTGGTTTGGCAAGTATACTTACTTTGACAGGATGTGCAAAATGGATTGATCGTGGTGAATCCATCACAGCGGTAGGCTCATCAGCTTTACAACCATTAGTAGAGACAGCGAGTGAGGAATATCAAAGTCAAAATCCGGGAAGATTTATTAATGTCCAAGGTGGCGGAAGCGGAACAGGTCTGAGTCAAGTCCAATCTGGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //