Array 1 3118-1934 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXME01000059.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864846, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3117 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 3056 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2995 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 2934 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 2873 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [2820] 2819 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 2758 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 2697 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 2636 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 2575 29 93.1 32 .............T.A............. AACAATTTGAAGTTTCTGCGCCAAGTCGTTTC 2514 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 2453 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 2392 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [2387] 2330 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [2318] 2268 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC CC [2256] 2205 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 2144 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 2084 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 2023 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT C [2012] 1961 28 86.2 0 ..........A.....T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 95.4 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 209241-210914 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXME01000004.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864846, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 209241 29 100.0 32 ............................. TAGCTCCGAGGCTTCTTCTGCCTCGAATGCCG 209302 29 100.0 32 ............................. CGCCTTTTCCGGGGTGTTCGCTGTGCAGACCT 209363 29 100.0 32 ............................. ATAAATGCTCCCATTTGGCTTGAGCACACGGC 209424 29 100.0 32 ............................. AAAACGATCCTATTTCCGGGATTGCCACCGTG 209485 29 100.0 32 ............................. ATATCTATCGCCTGCTGGAGATTGGCCCGATA 209546 29 100.0 32 ............................. TGAGTCGTCATCAAAAATTGCGTCCATCAGGG 209607 29 100.0 32 ............................. TTCACTTGCCACCCCTCCCCAGGCTGGCGATC 209668 29 100.0 33 ............................. TCACTACTGCAGCCGCCCTCACTGCAGCACCGC 209730 29 100.0 32 ............................. TGATCATGCCGCCTGGTGTCGTAATTTTTCGC 209791 29 100.0 32 ............................. GACGGCGAGAGCGTGTTCAACCTCAACACACT 209852 29 100.0 32 ............................. AAGTCGCATTTGTTGAGGCGCTTTCAGTCGAC 209913 29 100.0 32 ............................. TACTCCTCGCCGATCATCGCCGGAATAACGAC 209974 29 100.0 32 ............................. TTGTCATTGTGTAAACCTCGTGGTTTGTTGGT 210035 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 210096 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 210157 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 210218 29 100.0 32 ............................. GGGTTCCAGTACCTTCACACCCGCGACTTCGT 210279 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 210340 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 210401 29 100.0 32 ............................. TGGTTCTTTCTCGCTTTCAGGCAGCCGATCGA 210462 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 210523 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 210584 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 210645 29 96.6 32 .....A....................... TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 210706 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 210767 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 210828 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 210886 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTGATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //