Array 1 35633-44170 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSXN01000001.1 Rathayibacter toxicus strain FH100 FH100_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 35633 29 96.6 32 ............................T GTATTCGGGTGAGACGCCGGTTTATATAAAGA 35694 29 96.6 32 ............................G ATAAATGTCTTTATATACAGGCTCTAGGAAGC 35755 29 96.6 33 ............................T CGATGTATTTGATTGGTTCTGCCTTGATGTATA 35817 29 96.6 32 ............................T TTTAGCTGTCGTCGATAAATCGGTTTCTATAC 35878 29 96.6 32 ............................T AGATTACACTCGCACCGATGAAGCGCTCCCGC 35939 29 100.0 32 ............................. GGATTTAACCGCATTCATGAAGTCTGCTGCTT 36000 29 96.6 32 ............................A TGTCGTTGCTGTGCATATTGGCCGCGGGTGGT 36061 29 100.0 33 ............................. ATCCTCAACTCGCTCCTGCGGGCCGCTCTCAGC 36123 29 100.0 32 ............................. TCGCCGAGAGTGGGCATTACAAACCAGCGCCT 36184 29 100.0 32 ............................. TCCCCGCACTGATCGATTACTGGGCAGCGCCT 36245 29 100.0 32 ............................. GTGGGGGCGATTACGCTACCCCAAGCCCAAGA 36306 29 96.6 33 ............................G TCATCGGCGCCAGGACAAGCAAACGGGCGAGTG 36368 29 96.6 32 ............................T ACTGTCCTGCTGGCCGCATATCTGGCAAAAGG 36429 29 96.6 32 ............................G AAGTGATCTGCTGCTGCGAAAAATCCCTATTA 36490 29 96.6 32 ............................G CGACGATCGCATCACACCCACCCATCTGTGTC 36551 29 96.6 32 ............................T CACGACCGCGACGCGTAACGGGATCTATAACA 36612 29 96.6 32 ............................T CGTCCTTTTCTTCATCAAAAAGCGCCTCGATG 36673 29 96.6 33 ............................A AATATCCTCACACAACGAGAGAACCCCCAGGCG 36735 29 96.6 32 ............................T AAGGTCTCCGGAGCGATAATTGCTCAGATGGT 36796 29 96.6 32 ............................T TCGTTTGCCGCGGTCGCCTCTCCATCTCATGA 36857 29 100.0 32 ............................. TACGGGAACGGATGCGTCTCCGGATGGGTTCT 36918 29 100.0 32 ............................. TTCGGCCCAGGAACGCCATCAACCCAAATCAC 36979 29 100.0 33 ............................. CATCGCATCCTCAACCTTCCGAGCCTTATCCAC 37041 29 96.6 32 ............................A TTGATGCGCCGATTAGTCTGGCTTCTCCGCCG 37102 29 100.0 32 ............................. CGGAACGCCAAACCGGCGACCCACACGAGGAC 37163 29 100.0 32 ............................. AACTGATAGACCTATCGCTCCACTACACCGAT 37224 29 96.6 33 ............................T ACGCCGCCCTTCGCGGAGCACGTGATAGCGTCG 37286 29 96.6 32 ............................T CAATGACGACGACGCAGCAGCAAAACTCATCA 37347 29 100.0 32 ............................. CCGTCAGCAACTAAAGCATCCCTCGTCTCTCG 37408 29 96.6 33 ............................A CCGTCGACGACGAGTACGAGAAAATCCTTCAGG 37470 29 100.0 32 ............................. CTGACCCGTGATTCCGCTGGTCCTGCCGGTAT 37531 29 96.6 32 ............................G CTCGCATTATTCACGGTGAATACATCGTGAAT 37592 29 100.0 32 ............................. TGCACGCTCGCTCCTGTATATAAAGGCCAGGA 37653 29 96.6 32 ............................G CTCACCGAGCGGCTCGGGATAATGCCTCGCCG 37714 29 100.0 32 ............................. CGTAGATGCCCTGCTGTTAGATCCCCGGAACG 37775 29 100.0 32 ............................. TCAAACCCTAGTTATCGGCATAGTAAACATGC 37836 29 96.6 32 ............................T ATCATTACCGCGGTTATTACTTTAGTGATAAC 37897 29 96.6 33 ............................G ATACGGAGTGTCGACCACTTCGCCAGGAAATTT 37959 29 100.0 33 ............................. ACGAAAATGCCTACCTGTACGGATCTATATGGG 38021 29 96.6 32 ............................T CACGTTTCAGATTGCTATCGCCAACGCCGGTG 38082 29 96.6 32 ............................T AGCAGTCAAGACGTCGAGCGATATATCGAACT 38143 29 96.6 32 ............................G TAGTCTAAACCGCATAAAAGAATAAACCCCCT 38204 29 96.6 32 ............................T TCCACCGTCGAGCGGGGGGTAGTTTACGGCCC 38265 29 96.6 33 ............................T ACGCGACGCCGAAACGGGAATAGGGACACCCGG 38327 29 100.0 32 ............................. GGACCTACCGGACTTTCGGGGAACCTAGATGC 38388 29 100.0 32 ............................. CGCTTTCCAGCGCCTGTATATAAAGATATTTA 38449 29 100.0 33 ............................. GTCCGGCGGGAGTGGCGAGTTCGCTGCCGGATA 38511 29 96.6 32 ............................G CCTCACCCCACTCGCTGACAGCAGCCTCATCA 38572 29 96.6 32 ............................T ATAATTTGCGCGTGATAGCATGGCAGCAGACA 38633 29 100.0 32 ............................. GTCTTATTGCCGTCTTCGATACTGAGACGACT 38694 29 100.0 32 ............................. ATGGCCATCCAAACACGTCGCCCTACAGGTAT 38755 29 96.6 32 ............................G CAATATCATCAGCAGTCAGCAAAAGGCCCGAG 38816 29 96.6 32 ............................T GGTCAACCCATTTTCGGCGGGCCCATCAATGA 38877 29 96.6 34 ............................A CATCTACAAACCCGAGCAGAACCTGGGCACCCTG 38940 29 100.0 32 ............................. TTTTACCCGCTCACATATCAGACCGATCCGGC 39001 29 96.6 32 ............................T CACCTGCCCATTGGTGGCCCTCCAGCCCTCAT 39062 29 100.0 32 ............................. ACATGTCCTACTCATTGGGGGGTTCCGACTAT 39123 29 96.6 32 ............................G CAGAAGTAAATGCACCCCCCGCCTACTAGCCC 39184 29 96.6 34 ............................T GTTTCCTCACTGTATAGGGCGGAGTTGTGAGTGA 39247 29 100.0 32 ............................. CCTCGACGACGAGTACGAGAAAATCCTTCAGG 39308 29 96.6 33 ............................A TCAGAGTAATAGGCGCCCTCCCGATCGGATTAG 39370 29 100.0 34 ............................. GACGCTACGCTCATCCTCACCAGAAAGTTGATAG 39433 29 100.0 32 ............................. GCCAACTCTGGTAGTGGCGCTATGGGTGTCTT 39494 29 96.6 32 ............................T CGCGTTAATAGCGGCATTCGCGGAGTTAGCGA 39555 29 96.6 33 ............................A ACGTCTCGGCGATAAGGTCACGGAGAGTAATAA 39617 29 100.0 32 ............................. GCCGACTGGACCTCTATCCCCGATTCTTTTAT 39678 29 100.0 32 ............................. GCCCGCCGGAGTACAGACAGCACGCGTACGTC 39739 29 100.0 32 ............................. AGATTTGACCGCATTCATGAAGTCCGCCGCTT 39800 29 100.0 33 ............................. CTCATAATCGACCCCTCCGCGCCACCCCTGCGG 39862 29 96.6 32 ............................G ATGAGACAACCACCGCCATCGAGGATTTTTAC 39923 29 96.6 32 ............................G GATGGAAACTCGTCAACCGTTCCCACATAAGC 39984 29 100.0 32 ............................. TATCTAGCTCGGACATTCTCAAAAGCGACGAA 40045 29 96.6 32 ............................G CACTCTCGCCCTCGACGGGTGTGGGGGTTACT 40106 29 96.6 32 ............................T CGGTTTTTTAGGATCAGAAGGCTCCCACGTTT 40167 29 100.0 32 ............................. CGCTCCCAGGAGCTGGCTTTCCCAAAATTATA 40228 29 100.0 32 ............................. TCCGTAAGCATCAGAGATATTCTCGGCTATGC 40289 29 96.6 33 ............................A CCGCCATGCCGGGCGCCTGGAACGATTTCTGTC 40351 29 96.6 33 ............................A CAAAATAGTCGGAATAAAACTCCGAAAGAGAGG 40413 29 96.6 32 ............................T CTGGGACTATCTCAGCCGATTGCCCTCGCGGA 40474 29 96.6 32 ............................T GCCCTGCCCCCCACCCCAGCCAGGGAGCGAGA 40535 29 96.6 32 ............................A GATCAGCAGCAGCAGTGCGACCTAGCACGGTG 40596 29 100.0 32 ............................. CGCAAGCGCTTCCATCATCAGATCGACGACCT 40657 29 100.0 32 ............................. ATCTTCCACCATCACCCTAACCGCCACACCCG 40718 29 100.0 32 ............................. GGTTTCCAGTCCGATACCTCTTATCGGGAGAA 40779 29 100.0 33 ............................. GCGTCCGACAATATCGGGGTCAAAGTAGTCTAA 40841 29 96.6 33 ............................G TCCGGCACCACACATGCCTCCAAAAGGTAGCGA 40903 29 96.6 32 ............................T AAATTGATGAAAGAGGCTCTACCTGAGGGTAC 40964 29 96.6 32 ............................T CATGGCTACCTGGCTGGCTGGGGAGCGCGTCG 41025 29 96.6 32 ............................T CTGGTTGCCCGCCGGGGACCTGACCCTATCGA 41086 29 100.0 32 ............................. ATTTGTATGCCCATCTCGATGAGGCGCGGCAG 41147 29 96.6 32 ............................T CGCCACCGAGCTTAGACCCGACATTGCGGCCA 41208 29 100.0 32 ............................. GCCAGACAAAAAATTGTCAGTCATATTGACTC 41269 29 100.0 32 ............................. TCTTCGGCTTCTTTGAGAATACTTCCCATATC 41330 29 100.0 32 ............................. CTTGGCGGCAAGGCAGATAATCAAAAGGATCA 41391 29 96.6 32 ............................G CACAAGCGCCACACTAGGCCGCGTACTGGACC 41452 29 96.6 32 ............................T AAGGACCACAATAATGTCTAAATATAAAGTTT 41513 29 96.6 32 ............................T TGCTGAGGTTCACTAACGCGATCTCGATTTCT 41574 29 96.6 32 ............................G CCCGCTACAGCAAAAGCCCAGCACATCGCATC 41635 29 96.6 33 ............................G GGAGTTTTCGCCGACGAGCCTTAAGGAGCCTTC 41697 29 96.6 32 ............................T GTTTGACGATTCCTTCACCGCCAACAGCACGG 41758 29 100.0 32 ............................. GCGCCATTTCCAGGCTACCGGGGTAAGTCGTG 41819 29 96.6 32 ............................T CGACAGGGGTTTCACCCAGCGCGACCGCGGTT 41880 29 96.6 32 ............................T GGTTACGGGTGCCGTACCAACATGTGCTGTCG 41941 29 96.6 32 ............................G AATCGTTCACATACTGCTGCCAAGGGTCCAAA 42002 29 96.6 32 ............................G ACGCTCACGAAGAAAACCCTCAGGATTACTCT 42063 29 100.0 32 ............................. ATGCTCCCCCGCCTGATCGAGATGGGCATACA 42124 29 100.0 32 ............................. CAGCGTTTGGGTTAAAGTAACGGCGGTGATAA 42185 29 96.6 32 ............................T CGTATTCTTCTTCTTTGGTGGTCATATTGTTC 42246 29 96.6 32 ............................G AGCCTGAATTCTTAGTACTCTATCCTTCAAAA 42307 29 100.0 32 ............................. GCCGACGCGCAATGGGGCGAAGTGCATGATAT 42368 29 100.0 33 ............................. CGGCGGGACCTCTGGGGGGAATAATTAAAACTA 42430 29 96.6 32 ............................G TTTGCAGGCGCTGCCCAGTAATCGATCAGTGC 42491 29 96.6 32 ............................G CTAACATAGGTGTTTTCTTGGCGGAGTTGTGC 42552 29 96.6 32 ............................T AAACTGGTTATCGGGAAGGGAAGAAGATACTT 42613 29 96.6 32 ............................T AAGAGAAGGATTACTATCGGCAATCGCCTTAG 42674 29 96.6 32 ............................T TCACGCGGAGAATAATCTGGCTAACCGTCTCG 42735 29 96.6 32 ............................G TGGTGACCGCGGTCAGCTGCTTACTTGGGTGC 42796 29 96.6 32 ............................T CCATGAACCTTCACGGACCTCACCAGCAACAG 42857 29 96.6 33 ............................A CGGCAGCGACTATGGCGGCGATATTCACCTACA 42919 29 100.0 32 ............................. ATCAGAGACCGCCGGGTTATCGAAAGATTCAC 42980 29 96.6 32 ............................G AAATAAATCTCCACGTATCGGACTGATTTGAA 43041 29 96.6 33 ............................T GCTATTAACGCACAATCCAAGAAAACCCACTGC 43103 29 100.0 32 ............................. GATCATGTCGGGATTATATTTATCAAGTTCTG 43164 29 96.6 32 ............................T CTTTTCACAAGCGCGACATTTCTTCTGCATAC 43225 29 96.6 32 ............................T CTTTCGTGGTCGTTGCCGACGCCTCCGCTGAG 43286 29 100.0 32 ............................. AGTTTCGACCGCAGCGAAGTTGAGGAACTGGT 43347 29 96.6 32 ............................T GTCGCGCCGCCGACCTTTAAAAGTGCACCAAC 43408 29 96.6 32 ............................T GTCCACTAGTGTTTGGGGACGGCTTCAAAACA 43469 29 96.6 32 ............................G GTCCTCATGAATCGCGCGAGCGGTATTTATGC 43530 29 96.6 32 ............................T ATCTAGTCATCACACATCCAGACGGTGACAAG 43591 29 96.6 32 ............................T GAATAGGGTTGCTTTTTCGCCCACAGTGTCGT 43652 29 96.6 32 ............................G GGCCGTCGTCGCATGGCGAATCGTCCGGTGGT 43713 29 96.6 32 ............................A CCGTCGTTAAAGCGCCCTCAAACTGCGGGTCC 43774 29 100.0 32 ............................. AACCTCGTCGCGACAACCCGAGCCGTCAATCA 43835 29 96.6 34 ............................T CACCTCACCATCCGGATCCAACACACCCACATCA 43898 29 96.6 32 ............................A TCAAGGCCATGGCAGAATCTGTCATGTCTCAC 43959 29 96.6 32 .C........................... CTCGAAGGCTACGGGCCGTACAACGTTGGAGC 44020 29 93.1 32 .............G..............T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 44081 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 44142 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= ================================== ================== 140 29 97.6 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAAGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGCGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCTGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : TCAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //