Array 1 480-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CFHY01000138.1 Mycobacterium tuberculosis strain Bir 117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 479 37 100.0 36 ..................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCC 406 37 100.0 34 ..................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAG 335 37 100.0 36 ..................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCT 262 37 100.0 37 ..................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCA 188 37 100.0 40 ..................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTAT 111 37 100.0 37 ..................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTA 37 37 97.3 0 A.................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 99.6 37 GGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Left flank : TTGCCGCCGCCGTTGCTCACC # Right flank : C # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 113-1174 **** Predicted by CRISPRDetect 2.4 *** >NZ_CFHY01000022.1 Mycobacterium tuberculosis strain Bir 117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 113 37 100.0 37 ..................................... TTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT 187 37 100.0 35 ..................................... AGCGAAATACAGGCTCCACGACACGACCACAACGC 259 37 100.0 37 ..................................... CTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 333 37 100.0 36 ..................................... ATTGACGATGCGGTTGCCCCGCGCCCTTTTCCAGCC 406 37 100.0 35 ..................................... GCCCCGGCGTTTAGCGATCACAACACCAACTAATG 478 37 100.0 36 ..................................... AGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 551 37 100.0 36 ..................................... TTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG 624 37 100.0 37 ..................................... TGATCACTCCCGACCAAATAGGTATCGGCGTGTTCAA 698 37 100.0 34 ..................................... TGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 769 37 100.0 37 ..................................... AGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCT 843 37 100.0 36 ..................................... GGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 916 37 100.0 35 ..................................... CTCATGGTGGGACATGGACGAGCGCGACTATCGGG 988 37 97.3 39 ......G.............................. CACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA 1064 37 94.6 37 ..................A.................T TGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 1138 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 99.5 36 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACC # Left flank : CCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCACCCCGAGAGGGGACGGAAACTCGGGGAGCCGATCAGCGACCACCGCACCCTGTCAG # Right flank : CACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGGGAACGGGCTTGACGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 12235-13140 **** Predicted by CRISPRDetect 2.4 *** >NZ_CFHY01000074.1 Mycobacterium tuberculosis strain Bir 117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 12235 37 100.0 38 ..................................... ACACCTCAGTAGCACGTCATACGCCGACCAATCATCAG 12310 37 100.0 33 ..................................... AGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 12380 37 100.0 35 ..................................... TGTTGCCTCATGCTTGGGCGACAGCTTTTGACCAA 12452 37 100.0 36 ..................................... CAAATGCGTCGTCATTTCCGGCTTCAATTTCAGCCT 12525 37 100.0 39 ..................................... TGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAG 12601 37 97.3 36 ....................................G CATGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAG 12674 37 100.0 23 ..................................... TTGAATAACGCGCAGTGAATTTC Deletion [12734] 12734 37 94.6 35 .CG.................................. TCGTCGACCATCATTGCCATTCCCTCTCCCCACGT A [12738] 12807 37 100.0 36 ..................................... CGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 12880 37 100.0 35 ..................................... GGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 12952 37 94.6 39 .........................A..........T CGTCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGA 13028 37 100.0 39 ..................................... CAACCTCACCGCCTGCTGGGTGAGACGTGCTCGCCGCGA 13104 36 73.0 0 ...................T..-.C.CCC...C.TGT | C [13128] ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 96.9 35 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACC # Left flank : TTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCCTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGA # Right flank : CCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGAGGAGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //