Array 1 146705-146307 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUWB01000044.1 Lactiplantibacillus plantarum strain Nizo1839 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 146704 28 100.0 33 ............................ TACATGGTATCAACCGTGTCAACAATCGTATTA 146643 28 100.0 33 ............................ CCGTTAGTTACTTTACTGCAAGCCGGAACGGTT 146582 28 100.0 33 ............................ CATCAAAAACGACGCTTTCAAGTTTACCGCCGG 146521 28 100.0 34 ............................ CTAGCCACTGACAATCCGCAATTAGGTAATAATG 146459 28 100.0 33 ............................ TCAACAATTGATACACTCAGTCAAAAGGTTACC 146398 28 100.0 33 ............................ TCCACCAGTTACAGAGGAAGACATACCTTTGAT 146337 28 100.0 0 ............................ | ATG [146313] ========== ====== ====== ====== ============================ ================================== ================== 7 28 100.0 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : GCTTTGAAACCGGGATCACCCCCGCGTACACGGGGAATAGGCTCGTCAGTATGAAAATGCCGTGCGGCAAGTGGGATCACCCCCGCATACACGGGGAATAGCCATAACCATTGATCACAGTAACAGAGGTTTCAGGATCACCCCCGCATACACGGGGAATAGCCCCTTTACAGCCGGTTTAACCGGTTCTGATTGGGATCACCCCCGCATACACGGGGAATAGTACTTGCAGTAAATGGAGTCCAAACATTCTATGGGATCACCCCCGCATACACGGGGAATAGTTTTCGTTCGTACGAATACAAATTAGAAATTTAGGATCACCCCCGCATACACGGGGAATAGTTAAAAAGATATTATGACGCGGGGCAAATGTTTGGATCACCCCCGCATACACGGGGAATAGAACTAGTAAAATACGGTCCAGAATTGGATACAAGGATCACCCCCGCATACACGGGGAATAGTTAGCCCGCCACTGTTCGGCGTTGCTCCGGTCA # Right flank : TTGGCTTGAATGCAGCAGTGACCCGTACAACAAAAGAGCGAGCCTTCGATTGAAGGCTCGCTTTGTGTTCTCAATTATTCAGTGTGGTGTTTCCGAACTGGACTGACCCAGGTGCCGCTGCCGTAACCCAGGATGGTTTTAACGGCTGGAACCAACGTTGTGACCAGGGCGAGGGCGTTAACCTGCCAATAGATCAGCATATAGAGTGGCATGAAAATCAGATATTTAAACTTGCGGCCACGGTCGTCAACGATCAATGCGGACAATAGCTGCAAGACGCCGGCGAACATTTCGAAGGTCACGAAGATGAAGGCCATGCAGAACATATGATAGACGCGCTCGTAATTGCCGGTAAAGAAGAAGGTGATGAGCGAGATCAGGAAGATCAGCGTTGAGACAAAGAAGAATAGGGACCAGATGATGCTCAGCGTTTGATCAGTAATAAAAGCCCATTGCTTCAAATACTTGCCGGGATGACTGGCAACTCGTTTAAAGTTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 146738-147315 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUWB01000044.1 Lactiplantibacillus plantarum strain Nizo1839 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146738 29 96.6 32 ............................T TGTATCCAATTCTGGACCGTATTTTACTAGTT 146799 29 96.6 32 ............................A AACATTTGCCCCGCGTCATAATATCTTTTTAA 146860 29 96.6 32 ............................T AAATTTCTAATTTGTATTCGTACGAACGAAAA 146921 29 100.0 32 ............................. ATAGAATGTTTGGACTCCATTTACTGCAAGTA 146982 29 100.0 32 ............................. AATCAGAACCGGTTAAACCGGCTGTAAAGGGG 147043 29 96.6 32 ............................T GAAACCTCTGTTACTGTGATCAATGGTTATGG 147104 29 100.0 32 ............................. ACTTGCCGCACGGCATTTTCATACTGACGAGC 147165 29 96.6 32 ..............C.............. GGTTTCAAAGCCGCTAAAGACACTAAGTCTGG 147226 29 93.1 32 ..........................T.T AAGCAGATTGCCACGTTACAAGAAACCATCAA 147287 29 86.2 0 ...............A.......A.C..A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.2 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : AACACAAAGCGAGCCTTCAATCGAAGGCTCGCTCTTTTGTTGTACGGGTCACTGCTGCATTCAAGCCAAGGATCATACCCCCCGCATACACGGGGAACACATCAAAGGTATGTCTTCCTCTGTAACTGGTGGAGGATCACCCCCGCATACACGGGGAACACGGTAACCTTTTGACTGAGTGTATCAATTGTTGAGGATCACCCCCGCATACACGGGGAACACCATTATTACCTAATTGCGGATTGTCAGTGGCTAGGGATCACCCCCGCATACACGGGGAACACCCGGCGGTAAACTTGAAAGCGTCGTTTTTGATGGGATCACCCCCGCATACACGGGGAACACAACCGTTCCGGCTTGCAGTAAAGTAACTAACGGGGATCACCCCCGCATACACGGGGAACACTAATACGATTGTTGACACGGTTGATACCATGTAGGATCACCCCCGCATACACGGGGAACACTGACCGGAGCAACGCCGAACAGTGGCGGGCTAA # Right flank : AAACAAAGCCATAGATAAAACAACAAATCACTTTCGAACAACTGCGACTTCACAAATATAAAAGTGCATATTTTACACATCAGCACTACAAAGTCTCACTAAACGTTTAAAGAACCGTCGTTAATCAACTTATATGTTAACTCCAGTGTTGCCTTAGCATCTGAAAGCGCATTATGTGGCCTTAAGTTCACAATTTGATAATCTGCTAATACCGTTGACAGGCGATAATTATCCAAGAAGACATTTGTGCGTTTTACAATGGGCATGAGATCTGTTGTGTGATTGGTCAGTCTTTCTATGTCATTTTCTATAAAAGCTTGCTTCAAGAACATTTCGTCAAAATGGAAATTATAGCCTACGATTACACTATTACCAATAAAGACCTTCATTTCACTCAACGCCATAGCTATCGAAACGCCTTGCTCATTAAGCATGTCACGTGTGATTCCAGTAAGCGCAACAATTTTTTGGGACAACGGTCGATCAATTTTTATTAGTCG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 149588-150103 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUWB01000044.1 Lactiplantibacillus plantarum strain Nizo1839 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 149588 28 100.0 33 ............................ CAACTATACCAGATTTTAATTATTTCCCGTCTT 149649 28 100.0 33 ............................ TATCAGTAATCATGTCAGCCGTGGCGTCTAATA 149710 28 100.0 33 ............................ TCTTCTTTTGCCAAAGGTTTATCATCAACAAGT 149771 28 100.0 33 ............................ TTGGAAACCGCCCCACCGACAAGCGCGCCCCCG 149832 28 100.0 33 ............................ CGGCATGTAAAGCTTCGGTTTAATAACATCAAA 149893 28 100.0 33 ............................ TACGACTTAACTTATGATGATTCAACATGTCAT 149954 28 100.0 33 ............................ CCTTCGGCTTGTCACTCTCTAACGTGTCACCGT 150015 28 100.0 33 ............................ TGGCGCAGTTGCCGGTTTGATTGTTAGTGCGGC 150076 27 89.3 0 ...............G.-A......... | T [150101] ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.8 33 CTATTCCCCGTACATACGGGGGTGATCC # Left flank : TAATAATTGCTGCGGGTACAAAAACCACGCCACGAGCATCACTGACTCGAATCGCACTATCTTGGCGATCGAGTTTGGCATGTTCCAAGTATAAAAATGTTAATCGATCATGAATTCGACTCAATTCTGACAATTCTGGCTTTTTTGCTCCAGATTTTTTCATTAGTACTGCACCTCCAAAATATCTGCATCAAGTTCACACAGTTAACTCTCAAAAAACAATTTTTCCATGAGTAAAGAACATAATGCGCTTTTAAATATAGGATAAGTATTGGTCAAACGCGAAAGAATACGCTTGCATCTTGCTGTAACCCAGATGCTCAAAAAAACTCAGAGTATCATATTTCATCAAAATCAAAATTATCGCGCCTTCATAATTATAATATCATAATTCATTTGCCATAAAAAACACATATATGTATACTTATATGAGATACAAAGTTAACTGAAAATTGCTCATCAGCTCTTTCATATTATTGATATATCACCATTTCTTTAGT # Right flank : CGCCTATTTGTTCGACGGGAATTTCTTCCCCGCTACAGGAAACCCATATTTTAATAAAGATTCAAGTCATCCCTAATTATACTGTTGAACATGAATCCAGTTGGATCCGGTTAGCCATTCGCAACATATATAGAAGAAGGTGAAAAAAGTGTTTGAATTACTTGAGGCTATTATTGACATCATCAAACATTTTGGAATGGCACTTGTATTAGGATTTTTAGCATATGCTCTAATTTATATAATTATCGGTGTATTTACGATGAATTAGATACGCTACTTTCCATAACATGAAATGGAATCTTCAGTTACTCTTTGGCGTACTTTCTACTTACTAATGCTTAATTTAATCCTTTATCTTAATCAAAAAGTATTGACGAAATATAGACATATGCAAAATAATTTCAAACCAGTCAAGATCAAACCAACTTGCTGGCTATATTTTCTAGTCGACCCATTTCGTTTCACATTTTAATTCAGCCTGATTATTGCAATATTTTCTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTACATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 152514-153643 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUWB01000044.1 Lactiplantibacillus plantarum strain Nizo1839 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 152514 28 100.0 33 ............................ CACAAGTACGGTGTCCTTGTAGCCTACGCAAAA 152575 28 100.0 33 ............................ CAGTTTTACAAATTTACCAGCCGCCGTCGAAGA 152636 28 100.0 33 ............................ TTATTCACCCTCATCGATATCAGGTTCGGCATT 152697 28 100.0 33 ............................ TACTATCAACTGAAAGACCTGTACCATCATGTA 152758 28 100.0 33 ............................ CTAATATCAAAATCTAAGTTATGATAAAATAAT 152819 28 100.0 34 ............................ CAAGAAGACTTATTTACAATTTTTACAAGCCTTA 152881 28 96.4 33 ......................C..... TAAGCCGTAAAAATATATATCGTTATGATTGGA 152942 28 100.0 33 ............................ TAGCAGTTATCAACCGTTAAACCGGCCGATCAG 153003 28 100.0 34 ............................ CATCAGGAACCGGCTTATTAGTAGCTTTGATTTG 153065 28 100.0 34 ............................ CAATGAAGCAGACAAATTCTTAAACGATGTATTG 153127 28 100.0 33 ............................ TAATACGGGTAAAGGCGCAACCGTTGATCCGCG 153188 28 100.0 33 ............................ TGTCTCGCCCCTCGTATAGAAGCAGTGATGCGT 153249 28 100.0 33 ............................ CCTGCCAGGGAGATAATTGCAGTTAGTAGGCTC 153310 28 100.0 33 ............................ TGGTCAATTAACGGGTATCGCTGAACAGGTTAA 153371 28 100.0 33 ............................ TCATTATCAACATCTCCATCTTTCTTCACATAC 153432 28 100.0 33 ............................ TGGTCCCGTCAGCGCTAGTCGTCTCATCTTCGT 153493 28 96.4 33 .C.......................... TAAAGTGTTGAAAAAATCAAGAACATTCTTGTT 153554 28 100.0 34 ............................ CGACCTTGATAAATGGGTGCGCTATTCCTTGGAG 153616 28 92.9 0 .......................A...T | ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.2 33 CTGTTCCCCGTGTATACGGGGGTGATCC # Left flank : GAAAATCGGCGCCCAATCGACCTTAAAAAACTAATCAAGAAACGTGGGACATTTGCTTGGGAATGGATGTACTCAAAATCCTACTACCACACGGCCGACATGATTAGTCAGCACGATATCTTAGAAACCATTGCGGGTTTGCTTGACCGTGGCTTGCTTCAAAGCACGCTATCACAGACACTACGGCCAATCAACGCGCTTAACTTGCGGCAGGCCCATCAACTTATTGAGCAGCATCATATGATTAGCAAGGTAGTTATTGATGGATGGGAATGAGTTGACGTGTATTACGGCTCACGCGATAATGATCAACTTTAACTCGCCAAATACGCTGTCCTGTTCTGTCTTTTGATGCTTACAACTGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGAGCCATACCTTATAGTCAAAGTAGTGGCGATTTTGCAAGTTAACTAAAATTCCTTGTTTTGTTATTTTTGATTGTTGATTTACCGGGATTTATTTAGT # Right flank : TAGGTCATTAAACTTTCCAGTCCGAACCAACGTCAAACCTATGGTATCAGATGGTATCAGACTCGCTTATTTTAGCATCGCCCCCCGCTAAACTACCAAACTTTCTTTTTCAGTTTCCAAAATATTAGTGCTATGATGATAGCATCAATTTGACTAAAACACTTAATCAGAAAGGACTTTAAAATTGGCATTTAAAACACCACTGGCTGATCAGATGCGCCCGCAATCATTGGAACAGATGGTCGGACAACAGGATCTGTTGAAGGCAGGCCAGCCACTACGCCAGATTATTGATCAACATGTTAATATTCCACTCATTCTGTGGGGGCCGCCGGGAACTGGCAAAACTAGTTTGGCGCAGATTATTGCGAGTCAAGACGATTATCCATTCGTGGCTTTTAATGCTTCGACCGAAAATAAGGCACAGCTGACGAAAGCCATCGCACAATACCCAGAGCAATCGTTTGTTCTATTAATTGACGAAATTCACCGAATGACTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //