Array 1 150297-148633 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKX01000007.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N48704 N48704_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 150296 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 150235 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 150174 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 150113 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 150046 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 149985 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 149924 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 149863 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 149802 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 149741 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 149680 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 149619 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 149558 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 149497 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 149436 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 149375 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 149314 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 149253 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 149192 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 149089 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 149028 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 148967 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 148906 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 148845 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 148784 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 148723 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 148662 29 96.6 0 A............................ | A [148635] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 167681-166555 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKX01000007.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N48704 N48704_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 167680 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 167619 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 167558 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 167497 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 167436 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 167375 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 167314 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 167253 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 167192 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 167131 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 167070 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 167009 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 166948 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 166887 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 166826 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 166765 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 166704 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 166643 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 166582 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //