Array 1 654-2009 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAKH01000025.1 Neisseria meningitidis strain Neisseria meningitidis isolate 23038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 654 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 720 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 786 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 852 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 918 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 984 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 1050 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 1116 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA 1182 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 1248 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 1314 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 1380 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 1446 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 1512 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 1578 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 1644 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 1710 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA 1776 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 1842 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 1908 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 1974 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTTGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //