Array 1 2-750 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFB01000087.1 Acinetobacter baumannii strain ABBL056 contig-79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 2 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 62 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 122 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 182 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 242 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 302 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 362 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 422 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 482 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 542 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 602 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 662 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 722 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 13 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1115-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFB01000074.1 Acinetobacter baumannii strain ABBL056 contig-65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1114 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 1054 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 994 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 934 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 874 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 814 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 754 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 694 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 634 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 574 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 514 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 454 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 394 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 334 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 274 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 212 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 152 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 92 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 32 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 19 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6205-8447 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFB01000074.1 Acinetobacter baumannii strain ABBL056 contig-65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6205 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 6265 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 6325 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 6385 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 6445 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 6505 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 6565 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 6625 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 6685 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 6745 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 6805 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 6865 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 6925 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 6985 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 7045 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 7105 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 7165 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 7225 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 7285 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 7345 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 7405 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 7465 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 7525 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 7585 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 7645 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 7705 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 7765 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 7825 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 7885 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 7945 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 8005 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 8065 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 8125 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 8185 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 8245 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 8300 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 8360 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 8421 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //