Array 1 5455-4708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRV010000030.1 Pectobacterium versatile strain CFBP1118 Pectobacterium_versatile_CFBP1118_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5454 28 96.4 32 ...........T................ CCGATCCGCTGTTCTCTGAACATCAATATGTT 5394 28 96.4 32 ...........T................ TCGCTTTCGCCCGCACCAAACCATCCCTTGAT 5334 28 96.4 32 ...........T................ GTACATGCGCGTGGAGTTCCCTGAGACGGGCG 5274 28 96.4 32 ...........T................ TCACGCATGCGGGGAGGCTCCGCGCGTCTGGA 5214 28 100.0 32 ............................ ATCGGAACATCTGATAAATTCATCGAACGCCC 5154 28 100.0 32 ............................ AGACGCAGGAAACCGACGCGGTATTTATTACC 5094 28 100.0 32 ............................ ATCATGCGCACCAAATAAAAATAACTAACTTA 5034 28 100.0 32 ............................ AATAATTCCGGCACTCATCTTCGTCTCTCGAC 4974 28 100.0 32 ............................ ATCGCTACAACGAGATAGCACGCAACGCGAAT 4914 28 100.0 32 ............................ AGTCGGCCGTAAATGAAAGATGCGACCGAAAT 4854 28 100.0 32 ............................ AAACCCATGAAGATTTCGGACTTTCCGACCAA 4794 28 89.3 32 .G.........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 4734 27 82.1 0 ...........T.C........-...TG | ========== ====== ====== ====== ============================ ================================ ================== 13 28 96.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAACCATCCCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGACGTGGAAAAACGCAGCGCGCTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCTCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAATCCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAATCTTAACG # Right flank : CTTATCGGGATGCGTCGCTGACGCGGCACATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTGGGGTCAGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATATCTGCATCAACCCGACGTTTATCTGGCGCAGTGCGGTGACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 14409-16537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRV010000030.1 Pectobacterium versatile strain CFBP1118 Pectobacterium_versatile_CFBP1118_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14409 28 100.0 32 ............................ AATTGTAGCGATTGGGGCTGTTTTTTTGAACC 14469 28 100.0 32 ............................ CGCAGGCTCCAATTGTAGCGATTGGGGCTGTT 14529 28 100.0 32 ............................ TCAGGAGCAGCGGCAGGCGCGGCGGCTCAAAC 14589 28 100.0 32 ............................ TCGACAAGCGCAAAGAGATGATGCAATGGTGG 14649 28 100.0 32 ............................ AGACCAACAGCGCTGTGTATATGGGGCAAGCG 14709 28 100.0 32 ............................ AACAGATGTCCAACGCAAACCCTAGTAAAAAT 14769 28 100.0 32 ............................ CATGCGAGCGCCTTGGCATTAACCTCTGGTGC 14829 28 100.0 32 ............................ TGTGCTTATCGCGTAGCTGAAAACCTCACCAA 14889 28 100.0 32 ............................ TCAACTCTCCGACGCGGTGGATGAGGCTCAGC 14949 28 100.0 32 ............................ AGATAAAATTAAAAATGACTGGATGACGCCAC 15009 28 100.0 32 ............................ GATCAGGGGCGTGACGCGCCAACTGGCCTGTA 15069 28 100.0 32 ............................ GGTATAGCCACCAGCACCAGCACGAATTATCC 15129 28 100.0 32 ............................ TGCATGTCAGCCAGCGCCCGTTAATGATGACC 15189 28 100.0 32 ............................ AGGGAACGCTACAGACTCATTGCGACGAACGC 15249 28 100.0 32 ............................ CCACGCCGCGCTGCCTCCGCTTTCCAATCCAA 15309 28 100.0 32 ............................ TTCAGAGAGAATATCATCACGATTAATCGGAA 15369 28 100.0 32 ............................ GTGATACGTTTCTTTTCTAACTCGTCATGCCA 15429 28 100.0 32 ............................ AGTCGTGTAGAATCTCGCGTCAGGGAACTTTC 15489 28 100.0 32 ............................ ATGCCGCGATGAAGCGATCGGCGCGGTTCCAG 15549 28 100.0 32 ............................ ACAGCGGAAGAGGCTCTTTACATCCGGCCTTT 15609 28 100.0 32 ............................ AGAATCAAACCTGGTGCTGTGCAGATTGTGGA 15669 28 100.0 32 ............................ AGACTGCAAAGGCCTTGTACACGCTGCGCATT 15729 28 100.0 32 ............................ TTCAGTTGTTCGGATTGCCACTCCCTATTAAC 15789 28 100.0 32 ............................ GAAAGGTGCTACTGAACCGCGCTGATCAGGTC 15849 28 100.0 32 ............................ TTTTCAGGGAAATCACGCACCGCCGTAATACA 15909 28 100.0 32 ............................ TTATACGGTGCCGGAGAAAATGCCGCATGAGG 15969 28 100.0 32 ............................ AATGTCTACGCAAGTCGCCGCATTGCTGCGAA 16029 28 100.0 32 ............................ AAAGAACTACGCTCGATGAAATGGCGGTACGT 16089 28 100.0 33 ............................ CCACGCCAGTTACAACGCCGCCGACGATGCTTG 16150 28 100.0 32 ............................ CCGTGCCGCTGCTTAACGTGCTGGCCTATCAG 16210 28 96.4 32 .............T.............. AGCGGCAGTTAAACGCCGGTGATCTGATTGTC 16270 28 96.4 32 .............T.............. CTGGCGGGAAAACTGACGGGTGCGCCTGCTAA 16330 28 96.4 32 .............T.............. CGCAGAACTGGAGAACGGCTGGTTCACGGGCG 16390 28 96.4 32 .............T.............. ACGTCACATCGACAGCGAACAGGCCGTCACTT 16450 28 96.4 32 ...........G................ GATGCAATTTTTCTGACATAACATCAGAGCAG 16510 28 78.6 0 ...........C........T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 36 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGGTTCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAGCGGTGACGCCAGCGGAATAAATCGCAGGCTAACTATTTGATAAAGAAAAATATAATCGTCAAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCCATTTCACAGGTTTAATAATCAATGAGTTACGGCTAGGCTGAAAAAAAGGTTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCAACG # Right flank : ACGACCTCAAGCGTTATTGTCTGGCTATTATCGAGGTAGCGCTGCGCCAAGTGTTCAATGCATTTACCCCTTAAATAACGCATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGATGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAACGAAATAAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGATGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCCTGGAAAACGGCAATATTTGGTTGTACCGACCCCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 59991-61484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRV010000014.1 Pectobacterium versatile strain CFBP1118 Pectobacterium_versatile_CFBP1118_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 59991 29 100.0 32 ............................. CCCGTATTGTTGATAAATCCGGTAATCAGGGG 60052 29 100.0 32 ............................. TATACCCATCAGGGCGTAAAGTTTTTGTGTAT 60113 29 100.0 33 ............................. CGAATGACTCCGGCGTAACCAGTCTGTCAGGTG 60175 29 100.0 32 ............................. GCATACACTGTTGATGATTTCGTTAATGTCGT 60236 29 100.0 32 ............................. CAAAAACAGCCTGTAGCTCTGCCGATATCGTA 60297 29 100.0 32 ............................. AAACGTCATCAATGATTGTCCAGTTATCGCAG 60358 29 100.0 32 ............................. TGGTTTTAATTTACGCATCCCGCGACCGATTA 60419 29 100.0 32 ............................. CCAGCGCATCGATCGGGATCGAAAACCTGAAC 60480 29 100.0 32 ............................. CACAATGACAATGAAACGGTATGGCGCTGATG 60541 29 100.0 32 ............................. CGAGCTGGTGGCGTGTTCGTGAAACTGCCGGA 60602 29 100.0 32 ............................. CTGGAATTTTGAACCCTGCTTCAGCTCCAGAT 60663 29 100.0 32 ............................. TAGAACCGCGCAGTATTATATCAAGTGCAATA 60724 29 100.0 32 ............................. TAGAATCCTTCGCCTAGCTTACCTACAGGAAG 60785 29 100.0 32 ............................. CCACCGCCATTCTTTACAGCGTTGAAAGCAAA 60846 29 100.0 32 ............................. GATGGTTCCTTTGTCATCCTTCAGGAGGGGCC 60907 29 100.0 32 ............................. GTTGTGCGCCAGCGCAAACGCTCGGCAAGCGG 60968 29 100.0 32 ............................. TCAGCAGAGGCCAGCACAATGAGGCGCGGATC 61029 29 100.0 32 ............................. GCGCAGAAGGTTGTCACTATGACAATCTACGA 61090 29 100.0 32 ............................. GAACACGGATAGCTTGAGTGTGCCGATCGCTG 61151 29 100.0 32 ............................. AAATTCAGATGGTTCAGCAGGCTCAGCAACAA 61212 29 100.0 32 ............................. GGATAAGTGCGCTGATTGATGCCATCAGGGGC 61273 29 96.6 32 .............T............... GTGTTATAGGTGCCGAGCTGTTCGTCATTCAG 61334 29 96.6 32 .............T............... AAACTATTTCCGGCATGGTGGCTACAAGGGCA 61395 29 100.0 32 ............................. GTTCTGTTCACTGGCTCAAGCCCTGCGAACGG 61456 29 89.7 0 AC.........................T. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCACCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCTCGGTTGCGCGGCAGGCTGGCGGTGTGGTTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGAGCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCTGCACGGGAGCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCTATTTCTGCGCCCACTGTCACGGTGAGGCACTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCCGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGTCCTGCTGAATTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGTTAGGGCGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //