Array 1 956304-957429 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051410.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM 20760 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 956304 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 956365 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 956426 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 956487 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 956548 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 956609 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 956670 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 956731 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 956792 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 956853 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 956914 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 956975 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 957036 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 957097 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 957158 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 957219 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 957280 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 957341 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 957402 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 973687-975350 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051410.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM 20760 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 973687 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 973748 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 973809 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 973870 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 973937 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 973998 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 974059 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 974120 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 974181 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 974242 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 974303 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 974364 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 974425 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 974486 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 974547 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 974608 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 974669 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 974730 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 974791 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 974852 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [974894] 974894 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 974955 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 975016 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 975077 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 975138 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 975199 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 975260 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 975321 29 96.6 0 A............................ | A [975347] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //