Array 1 8845-13298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQK01000201.1 Methanosarcina mazei strain 1.H.A.2.1 scaffold79_1_size16790-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8845 37 100.0 35 ..................................... CTTCTAGTATTTTTAAATTGTTTCTCAGCGCATTT 8917 37 100.0 35 ..................................... CAGACAGACTTTCAACAAAGGTTTCTACAGGATTT 8989 37 100.0 35 ..................................... TGATACATCATTTCAGGTGTGAGTTCTTTGTTTCC 9061 37 100.0 39 ..................................... TCCCTGCTGCACACAAAGCCGCAGTTGATGATATGAAAT 9137 37 100.0 37 ..................................... ACATGAATATCCTGAGTCATAAATCCAATTTTTTCAG 9211 37 100.0 34 ..................................... TCCAGATGGTATTCCCGATGAGGCTAAAATGGTT 9282 37 100.0 35 ..................................... TTCACCCACCGCCCAAGCTTTTCATTGTATACATA 9354 37 100.0 36 ..................................... CGAGTACTCCGGTCTTTTGATAGTCTACCAGTGCAG 9427 37 100.0 35 ..................................... TGCAATTCCACAGACTCAGTGAAACCCATGTCAAA 9499 37 100.0 38 ..................................... ATAAAACTGTAGAAGAGTACGCAAAACAGCATAAAGAA 9574 37 100.0 36 ..................................... TTCTTCCAATCCAAATTCGCAAGGCGGCACGTCCGT 9647 37 100.0 35 ..................................... AAAAAGAGAAGTACAAAATCGAACTAATTCTAAGC 9719 37 100.0 33 ..................................... TTTCCTCCCATTATGATATTTGCATTTCTTATT 9789 37 100.0 37 ..................................... TGCAATGTCGGGCAATCCTGGTCAGTCTCGGTCTATG 9863 37 100.0 35 ..................................... CTCATTGTATAACTTCCTTAATTTTCTTATAGAAA 9935 37 100.0 35 ..................................... TTTTCAGGTCACTATGTAACGTTTTTCTGTGTTTG 10007 37 100.0 34 ..................................... AAAAAGAATCTAAAAAATAAAAGATGAAGTTAAA 10078 37 100.0 36 ..................................... GCTTTTCCTTGAATATCAAACCAGTTATTTTTCCAT 10151 37 100.0 32 ..................................... TCTGAGAGGCTCAAAAACGTCATTCATGGAAA 10220 37 100.0 35 ..................................... AAATTATTTCCATGCATCCGATTAAGCACGGTTAA 10292 37 100.0 34 ..................................... TCGGATACTCTTATCTTTCCTACGACCTTGCATG 10363 37 100.0 36 ..................................... TGTAATTCTGTCGCGGCGGGGCTGTTGAGTGCTGAA 10436 37 100.0 33 ..................................... CTTAATTCTTCATTGATCGCCAATAAGTATAAA 10506 37 100.0 34 ..................................... TGATTACAATCGTAGAATCAGCTAAAATCAAGGT 10577 37 100.0 37 ..................................... TAACATTAGTTACATTGTAGTATATACAGCAACATAA 10651 37 100.0 36 ..................................... TTCGTGAATTGATTGCTGAAAAAAGGAAAAGCGTAG 10724 37 100.0 35 ..................................... TTCCCCCCCAATCGACTACAGCAAAAAAATTATTT 10796 37 100.0 35 ..................................... TTGTTATTCTGCTTTTTTGCTTTGAGTTCTCCTGA 10868 37 100.0 35 ..................................... TAATAATGCTAAACTCACGGGGAACGGCGTAAATC 10940 37 100.0 40 ..................................... ATTCACTTCTAGAGTAATATATCCCATTTATCCAGATTGA 11017 37 100.0 35 ..................................... AACATTGTTATTCCTCAAAAGCGGTTTCCATTCCT 11089 37 100.0 35 ..................................... CGATATGCTGTATATGTCTTCCGTTTCGATTTTGT 11161 37 100.0 35 ..................................... ACTGCTTCCATGACTGCATTTTCCACAAGGTCAGC 11233 37 100.0 36 ..................................... CTTGGGCTGAACCGGCTGCCCCGTCGTTGACTTTTG 11306 37 100.0 34 ..................................... TATTCAGTTGAGTCTGTCGCCAATGCTTCAACCC 11377 37 100.0 34 ..................................... CAATGGTATTGTTCTCAGCAAGTGAGGCAACAAC 11448 37 100.0 35 ..................................... AATAATAGAAATTACATAAGTAAGTATTAGTTAAG 11520 37 100.0 35 ..................................... CTAGGGCTGTGTGTAGTGTGCTTTCTGCTGTGGCT 11592 37 100.0 36 ..................................... TTATATGGGTCAGACTCCCAGAACTGGGCGGCGGTC 11665 37 100.0 37 ..................................... CAAATCTTCTCAATATGGCCTTTCTCAGGCTCTCTAT 11739 37 100.0 35 ..................................... TTGTCTGTTTTTGCTTAGTGTTCTCCCGTAGGTGT 11811 37 100.0 34 ..................................... CAGTTCCGCCCGCCGCGATTGTTTTCTGTATCAT 11882 37 100.0 39 ..................................... TAAATGTGGTCAGATGAAACACATCGCAGGAGTGGGCGG 11958 37 100.0 36 ..................................... TTTCCGTCTATACCATACTCGTTTTTCATCTTGGTA 12031 37 100.0 35 ..................................... TGAAAGTCGGAGCCACACAAAAAGAAACGTTTACT 12103 37 100.0 35 ..................................... CCGAAGACCTTCTGACCGAGATGCAAGCGAGGGAG 12175 37 100.0 37 ..................................... AAAGCTACATCCCCTGGACAGGAATAAACGAGGAAAC 12249 37 100.0 40 ..................................... GTGGTTGACCACAAATTAACTGTTACGTTCACACTATCGA 12326 37 100.0 34 ..................................... TGATAATCCTGGTGTTCTTCTCACTGACAATTTT 12397 37 100.0 35 ..................................... AAAGTTTTTTCTATCTCTGCAGCTAGAGCTTTAGC 12469 37 100.0 35 ..................................... CCCTCTGAATCCACTCCATGAAAATGAAGCACTTG 12541 37 100.0 34 ..................................... AATACTGCTGCCGGTCCTGCTCCATATTCTTCTT 12612 37 100.0 36 ..................................... CAGACAATATCAGCAGGTGGAAAGAGGGGGATTTTT 12685 37 100.0 36 ..................................... CAGGAGTAGCTGTAAAAGATCCTGCTGTAACAAATT 12758 37 100.0 34 ..................................... TCATCAGAAAGCCCGCGTGAATACTTCATTTTCT 12829 37 100.0 34 ..................................... TTGCAGGTTTCACCGGTTATGTCACATGTTACAG 12900 37 100.0 35 ..................................... CGGTTCAGGACTCGGTAGAGCACTATTCCCGAAAG 12972 37 97.3 35 ..................C.................. TCTGAGGAGACCACTAAAGCCAGTCGGACCCACTG 13044 37 97.3 36 ..................C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 13117 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 13190 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 13262 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ======================================== ================== 62 37 99.7 35 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCTGAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 15363-23060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQK01000105.1 Methanosarcina mazei strain 1.H.A.2.1 scaffold13_1_size38891-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 15363 37 100.0 36 ..................................... CATGAGCTTCCAAGGCGCGGGATGGTCGAAACCTGG 15436 37 100.0 35 ..................................... ATTGGTTCTGGATACTCAGACCAACAAAAAAACTG 15508 37 100.0 34 ..................................... GGGCATTATTTAACCTCATAGATCCTCTATTCCC 15579 37 100.0 34 ..................................... GGACATACAGGCTTTGCTTTCGCTGTCGTGCCGT 15650 37 100.0 35 ..................................... AGTATCTTGTTTTCTAATTCCAACCTCTTATTTTT 15722 37 100.0 37 ..................................... CAAGGTCATATACTCTGTTTTTTAGTTCTAGAATTTC 15796 37 100.0 35 ..................................... CATGGATCTCTCTGTCTTCGTAATCTTTAAGTGGT 15868 37 100.0 33 ..................................... TTATCAAGATGTTTCCAAGAGTAATAAATCCGA 15938 37 100.0 35 ..................................... CAGTCTCGCTCATCTTTAGTTTCCTCCTATTTTAC 16010 37 100.0 37 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAGAA 16084 37 100.0 37 ..................................... CTCTCTGAAATTTCTTCGTTTTCCTCTGTCATTCCGA 16158 37 100.0 36 ..................................... GACGGGTTGCTGCTTCCAAAAGTTCGGGAAATTCAA 16231 37 100.0 34 ..................................... TTACTCTGCTTTCTCTATTCGGTTTATATGCAAG 16302 37 100.0 36 ..................................... CACATTAAAATAATGAAATCTGTATTTGCTTTCAAC 16375 37 100.0 34 ..................................... TAATATAAGTCGCCTTGACATAGAAAAATTAAGG 16446 37 100.0 36 ..................................... ATAGACCGCACAAAAGACGACGCACTAGAAAAGCTT 16519 37 100.0 36 ..................................... TGTTAAAGAGGTATGGTTAGAGAAGGGCGTGCCGGA 16592 37 100.0 35 ..................................... GCAGATGGCGAAAAATGTTATTTAGTTGATAAGAA 16664 37 100.0 33 ..................................... CGGACTTAAGGAATCTATTGTTTGGATGGATTA 16734 37 100.0 35 ..................................... CCCTTCTTACCATCGTTCAAGCCTCCTGCTTCTCT 16806 37 100.0 35 ..................................... CACTTGCTAAAAGTGTGTATCCATTCCCTAGATCC 16878 37 100.0 37 ..................................... GACGACTTGAAGAAAGAGCTTGAAGAGCTTAAAGAGG 16952 37 100.0 37 ..................................... TCGACAATATTTGAATCCAGATTTGGATTTAGTTTTT 17026 37 100.0 35 ..................................... ATTTCTCAGCCGGGTGTCCTGCTTCGACAAGTATC 17098 37 100.0 36 ..................................... ATAAGGACGCAAGACCGGACTTAGGCTGTCTTCAGG 17171 37 100.0 38 ..................................... TAATAAGTTAGGTGGTCCGTGTCAGGCATTATAAAGTG 17246 37 100.0 35 ..................................... TATTCCTGATTCGAACAGGAATCATAGCCTAACTT 17318 37 100.0 38 ..................................... TAAGTCGTTTGCGGAAGCAAAACGGGACATTGTGAGAA 17393 37 100.0 35 ..................................... GGTATTCCATATATAGTAATAGTAATAATAGTATT 17465 37 100.0 37 ..................................... CCGTAAAAGTAGCTCCACTTGTAAAACATGTAATTGC 17539 37 100.0 36 ..................................... GGTAAATTGATGCTGGAGCTGCACTTGTACTGAATA 17612 37 100.0 37 ..................................... AAATCAGGTTTTGATCTCTAACCAAAATCTTTTTATT 17686 37 100.0 36 ..................................... ATCAGTCGCACCAGCCAGCCCACAAGTCAACAAAAA 17759 37 100.0 34 ..................................... TGTGAGCGTATAAGGAAGTGGTCAAACCTACAGA 17830 37 100.0 35 ..................................... TGGCCCAGTAACTACATCATCAGCAAACATAATTT 17902 37 100.0 36 ..................................... TTCAGTTCGTCTTTGCCGGGATCTCAAAACTCAAAT 17975 37 100.0 35 ..................................... ACATGAAAGCTATACAAAGCTGATGCCAAAAATAT 18047 37 100.0 34 ..................................... AGGACGTTGCAGGCGCGACGGATAAGGCTGCTAA 18118 37 100.0 36 ..................................... TTATAATCGTAACCCTTGCGCCCGTTCATGATCCAG 18191 37 100.0 38 ..................................... TAACTGTATTCATTTTCAAGGAACCGCTTCAGTTCCGG 18266 37 100.0 34 ..................................... AGGAGGAGGATACATATCTCAGTTGCTCTATCAA 18337 37 100.0 33 ..................................... TGAGGTCATATTCAATTATATCGCCGGAAACGC 18407 37 100.0 34 ..................................... CCATTGTAAAGCTTGTGGTTTTCAGTTGCATAGT 18478 37 100.0 36 ..................................... TCGTCGAAGGACAGCTTTTGCTTATATCTTCTAAAG 18551 37 100.0 34 ..................................... CTGTATATGCAACAATTCCAAATGCCGTGCTTAA 18622 37 100.0 35 ..................................... ATATCCAATTTGCACGCGATTAAGTGAACTACCAC 18694 37 100.0 36 ..................................... TTCGCATATACACAGCAAGAGCAGTCATATCTTTAG 18767 37 100.0 33 ..................................... TTCCAATGAAATTGTGGTATCCCATTCCTAAGC 18837 37 100.0 36 ..................................... CGCATTTTGTATTCCTCCCATAGCGTGCAGTATTAT 18910 37 100.0 36 ..................................... CATCTAATTTAGGATCAGACCAACGTATCAAACCGC 18983 37 100.0 35 ..................................... ATAAAACAGTTGATGCATACGCTGTGCTTTGTGAA 19055 37 100.0 37 ..................................... TCAAGTCCATCAAATTCATTTGATCTGCATTCGTGTC 19129 37 100.0 32 ..................................... ACGAACTGCCAGCCGTAGAATCAGCAACTTAT 19198 37 100.0 38 ..................................... CCTTTTTATCGAGCGAAGTAACTTCAACTGAAAAAAAA 19273 37 100.0 37 ..................................... CCATGTGGTGAAGTCCGTAGCTGGCGTTTGTTGAATC 19347 37 100.0 34 ..................................... GCAGCTTCAGGAGACAGTCTGACAGTAACAGTTT 19418 37 100.0 36 ..................................... TACTCTTCATAGAAGTCTTTCAGGCTTTCAATATCG 19491 37 100.0 35 ..................................... AAAAAAAGTCAAGTAGATATAAAAGGGAAAATCAA 19563 37 100.0 35 ..................................... ATAAGGTCACGTCTATTTATGAACTTTTGAGAACA 19635 37 100.0 37 ..................................... AGAGCTTCACAAGCGCAATCTCTAGCTCCCTGAACAA 19709 37 100.0 36 ..................................... GGATGACTCTCGATTACATAGACGAAAATCCTGAAT 19782 37 100.0 35 ..................................... CTGAAACTCTTCCTGGAGATGGGACTGATACAGAC 19854 37 100.0 36 ..................................... ACTTTAGGTTGAGCCATTTGCTGAACACTAAGATCT 19927 37 100.0 37 ..................................... AGATATATCTGGCTGTCGTAAACACGTTCCGGTTTTT 20001 37 100.0 35 ..................................... TGATTCTTGGGGGCCGGCTTTCTGGCTGGTTGGAA 20073 37 97.3 36 .....C............................... TCCATCCTGTTTTCAAACTGCTCTACAATAAAAGCA 20146 37 100.0 35 ..................................... CTGCACAACTAATGTACTAATTTGTACTATGAAAT 20218 37 100.0 38 ..................................... CATTGCAGACTGATGGTTATGTCTGAGCGATAATTATA 20293 37 100.0 37 ..................................... TTTGTACATCCTGATATTTTTGACACATCTGTTCTAC 20367 37 100.0 35 ..................................... ATTATCATCAGTGTACTTTCAATGACACTGATTCT 20439 37 100.0 35 ..................................... AAGTAGTCTATGAAGATAAGGATTTAACACAATTC 20511 37 100.0 34 ..................................... ACATAACCTAACATAAGTTATATATACTATTAGG 20582 37 100.0 35 ..................................... TTAATATCTGCATCATACCAGGAATAACGGTTATA 20654 37 100.0 35 ..................................... AAATTGCATCGGCTGAGAATGTGTTAGAATACCGG 20726 37 97.3 33 ...........G......................... TAAATTAAAATTAGTAAATCCTTATACAGATGA 20796 37 100.0 35 ..................................... GATTTTCTGCTATACACATCTGTTCATAGTTGTTC 20868 37 97.3 37 .....C............................... TGTATGACTTCGTGATTGCAAACAGCCCATTGCTGAT 20942 37 97.3 35 .....A............................... ATCCTCCTGGTATGGGTAGCTGGATTTTTCTTTTT 21014 37 97.3 35 .....A............................... TATTTTCCTTTCAAATCATCAATTTCAGATTCAAA 21086 37 97.3 35 .....A............................... CCTGATACTGCTACTGGTCTCTGTTGATAGAGTGA 21158 37 97.3 36 .....A............................... AACGCAGTGGTGCAGGCTCTTATAGAGGTCGGAAGT 21231 37 97.3 37 .....A............................... AAAGCGGTTCTGGATCGTCTCAAAGTTCTGACGGGGT 21305 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 21380 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 21455 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 21526 37 91.9 71 .....A.............................GT CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAACCTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 21634 37 81.1 35 TG...A...T.GCT....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT A [21639] 21707 37 83.8 34 .G...A...T.GCT....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT A [21714] 21779 37 81.1 35 GG...A...T.GCT....................... TATCCCCTTAGATCCCTATAGACATACATGCCCGA A [21784] 21852 37 100.0 38 ..................................... CAGATTTGTTTTACTCTTCTAAGAGTAGGTATTGACTC 21927 37 100.0 35 ..................................... TATGGCCTTGGCCTCGCGCAAAATTCGCCTATAGG 21999 37 100.0 37 ..................................... CATTAAAAAAGGTAACAGCCCGAAGTATATCCAAAAA 22073 37 100.0 36 ..................................... TCATAAAATATGCGTTTTCTTCCTCGTTTCTCCATA 22146 37 100.0 33 ..................................... CAGACTTAAGGAATCTATTGTTTGGATGGATTA 22216 37 100.0 37 ..................................... AGAGTGCGACTTTTAGAATACAACTTGATAAAATACT 22290 37 100.0 38 ..................................... GTTTCAGGGAATTCATTTCTAAGAACTCTTGCAGAATT 22365 37 100.0 38 ..................................... ACTACAAGGCGTTCCTCAAAGTAATACAATAATAAAAA 22440 37 100.0 37 ..................................... ACGAATCCCATTAACCTGTATTCAGTCGCTTTCTTGT 22514 37 100.0 36 ..................................... TTTTGCAAATTAAGCTCATCCCTAATCCATGCCGGA 22587 37 100.0 34 ..................................... TAGATGTTGTCGGAGGGGACATCTACAGCAATGA 22658 37 100.0 36 ..................................... TTTCACACTCTCCAAATAAAAAAGGGAAATCTGAAT 22731 37 100.0 36 ..................................... TATACAACTAAAAATAATTAACAGTGATAAAAACAT 22804 37 100.0 36 ..................................... AGGATCAGGACGACGGCAATAATACTGAAGAATCCT 22877 37 100.0 37 ..................................... AACTCATTCCTTCTTGATGTCTGAAGCCAGCCTTCCC 22951 37 100.0 36 ..................................... TGATCGAGATAAAGATAACTGATGAAATGCGAGAAA 23024 37 94.6 0 ...................................GA | ========== ====== ====== ====== ===================================== ======================================================================= ================== 106 37 99.1 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : ATAAACTGATACTTTCCCTTGTCCAGGACTGGCTCAAGAAAGGCTCACAGGCAAGCGGTTCCGGGAAAAATTCTGGAAAAGGGCTGCTTCAGGGTGGGATAATCTCTCCGCTTCTTGTAAACTTCTACCTGGACCAGTTCGATAACCACTGGGCTGAAATCGGGCTCAAGAATGTTGAAGGGGAATCAATTGAGCACCTTGTCCGTTTTGCAGATGATTTCGTGGTCCTTTCAAAGGAATGGATCAACCCTGAGAGAGTTAAGGAAGCTATGGCTGAACTTGGACTTGAATTAAACAAAGATAAGACCTATGTCGGGACTGCCGTAAATGGGTTTGAATTCGTGGGTTTTTACTTTGAGGAAATTGAAGAGGAAAACGGGGCTGGGAGCATTATAAGAGTTATGCCTACCGAAGGGTCTATTGAGAAGGTAGTCGAGAGTATTGAAAGTATTGGAAGTAATGGAGATGTATATAATATAAATAGCATAGAAAGTCAAGGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //