Array 1 86669-87611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZIJ010000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 386 NODE_11_length_133855_cov_61.3946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 86669 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 86730 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 86791 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 86852 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 86913 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 86974 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 87035 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 87096 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 87157 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 87218 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 87279 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 87340 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 87401 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 87462 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 87523 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 87584 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 103742-105645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZIJ010000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 386 NODE_11_length_133855_cov_61.3946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 103742 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 103803 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 103864 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 103925 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 103986 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 104047 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 104108 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 104170 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 104231 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 104292 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 104353 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 104414 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 104475 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 104536 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 104597 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 104658 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 104719 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 104780 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 104841 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 104902 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 104964 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 105067 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 105128 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 105189 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 105250 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 105311 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 105372 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 105433 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 105494 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 105555 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 105616 29 96.6 0 A............................ | A [105642] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //