Array 1 7130-5442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMJ010000004.1 Listeria monocytogenes strain 2011L-2443 NODE_3_length_539140_cov_61.6959_ID_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7129 36 100.0 30 .................................... ATGAGTCGTGAAATATTCGAAAATGACATA 7063 36 100.0 30 .................................... ATCTTTCTTAACATTCTTCTTATTGTTCGG 6997 36 100.0 30 .................................... GGAAGAAGAAGTAATTGTTTCGAATGGAGA 6931 36 100.0 30 .................................... TTTAGGTAGCAATATTTCAACTAGGTGGTA 6865 36 100.0 30 .................................... CTAACTATGACTAAGTTAGCGAAAGAGCTA 6799 36 100.0 30 .................................... AGAAAGGCTCGAAATTACAACCACAAAGCT 6733 36 100.0 30 .................................... CTACTATATTAAGGGTTAAACCTGAACTGT 6667 36 100.0 31 .................................... CCCCGGAGCAATGGCAGTGTACGATGGTCCA 6600 36 100.0 31 .................................... TCTGTTCCGTTTTTGTCTACGCCATTTTGCT 6533 36 100.0 30 .................................... CTGATATTTTTAATCTCAACAGCGGAACTT 6467 36 100.0 30 .................................... CACCTTTAATATCGCCCTTCATAGCTAGAA 6401 36 100.0 30 .................................... AGTATTCTTTTTATTCTCTTTAGGAGTCTC 6335 36 100.0 30 .................................... ATCAATTTAGAAGACTTATTGAAGTAGATA 6269 36 100.0 30 .................................... CAAGCAGACGACTTTAAACTGATTAAGGCG 6203 36 100.0 30 .................................... TGCTTCCACCTCTTCTTGTTGCTGTTGTTT 6137 36 100.0 30 .................................... ATATAAAATACAAAAACAGTCAAGCGATGC 6071 36 100.0 30 .................................... CGGATTGCTGATCATCAAGTCACAACCCTT 6005 36 100.0 30 .................................... CTAGTGGATTTGCATACTTAGAATCTAATC 5939 36 100.0 30 .................................... GCAATTGAAATAGTGTCGTTTCTAAGTATT 5873 36 100.0 30 .................................... CGCCACTCTATTTTCATACTCCAGCATGCA 5807 36 100.0 30 .................................... ATGGAATGAGATTGAAATCATGGGGAGTAC 5741 36 100.0 30 .................................... TCTTATTCTGACGCTTTGGCCAAACAATTT 5675 36 100.0 30 .................................... CGCTGAAGTTTTAGTTTTAGAGTTGGTGCA 5609 36 100.0 30 .................................... TTTGGCGTTCTAGTATTTTGTTTAGGATTT 5543 36 97.2 30 ....................C............... TAGATTACGAGTTAATCGAAGTACGTCAAG 5477 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGTGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GGGCTGGTTATTTTAGGCGGGGGAGCGCTTGTTTTAGAGCTATGTTATTTTGAACACCAACACACAAAGATAAAATGCATCGCAATTAACAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGCAATGGGCAAAAAAATGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATGGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTATTTTCGAATAAAACAGAACTGCTGATCTAGAATTTAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 184937-184064 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMJ010000003.1 Listeria monocytogenes strain 2011L-2443 NODE_4_length_404604_cov_52.2463_ID_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 184936 29 93.1 37 ..........T.......G.......... GTAGTTTGTGACCGTTTAAAAACATAATTTGAAAAAC 184870 29 96.6 36 ..................G.......... TTACCCGTTTCATCATTTCCAAGCGTTGCATCAATG 184805 29 93.1 37 ..............A...G.......... TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA 184739 29 100.0 36 ............................. AAAACAACTAAAAGACCGCCTACTATTTATACTCCT 184674 29 100.0 36 ............................. TTTAACGTTGGCCCAACATTTTTATCTGAGAAGGGG 184609 29 100.0 35 ............................. TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC 184545 29 86.2 36 A.............AC..G.......... GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 184480 29 93.1 35 ..........A.......G.......... ATTTACGCAAGAACTGGAACTATTAAAGCCGCTAT 184416 29 93.1 36 .........G........G.......... AAAGGTAATACGAATTTATCTGTTAGTTGAAAAATC 184351 29 93.1 36 ..............A...G.......... TCGACATAACACATATATTTAAAATCATTAAAACTA 184286 29 93.1 36 ..........A.......G.......... AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 184221 29 96.6 36 ..................G.......... AAGGCAGTTAAGTAAGCAGCGACAGGGAACGGAAAT 184156 29 93.1 35 ..............A...G.......... GGAATCACGGACAGTCAGGCGAAGATAACTAAACT 184092 29 86.2 0 ......A........CA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 94.1 36 GTTTTAGTTACTTATTGTAAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTAGAGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATTCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCTACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCACCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTAAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //