Array 1 422454-424434 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDP010000001.1 Salmonella enterica isolate 0176_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422454 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 422515 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 422576 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 422637 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 422698 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 422759 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 422820 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 422881 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 422942 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 423003 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423064 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423125 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423186 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423247 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423308 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423369 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 423430 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423491 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423552 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 423613 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 423674 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423735 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423796 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423857 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423919 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423980 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 424041 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 424102 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 424163 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 424224 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 424285 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424346 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424407 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440567-441921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDP010000001.1 Salmonella enterica isolate 0176_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 440567 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 440628 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440689 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 440750 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 440812 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 440873 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440934 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 440995 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 441056 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 441117 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 441178 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 441240 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441343 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441404 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441465 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441526 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441587 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441648 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441709 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 441770 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441831 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441892 29 96.6 0 A............................ | A [441918] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //