Array 1 92557-87964 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJV02000003.1 Pectobacterium aquaticum strain A101-S19-F16 Pectobacterium_aquaticum_A101-S19-F16_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================= ================== 92556 29 100.0 32 ............................. TACTCATGTACTACCTTGTGACCCTGTTTCAT 92495 29 100.0 32 ............................. GCTCGTCCCGCCCCTTTGTGTACTCATCTCAA 92434 29 100.0 32 ............................. GGATGCGCGTCCCGCCGAATTTGTCACCTTCC 92373 29 100.0 32 ............................. ATAAGGGGTTAAACTCTCCGCGCATTACACCA 92312 29 100.0 32 ............................. ATATATATACTGGGTGGCTGCGTGATCGCACG 92251 29 100.0 32 ............................. AATGTTTCACCTTCGTGTCCGCGTGTTAAATC 92190 29 100.0 32 ............................. CCGTTACGCAGAACCAGAACACAGAATGTCAG 92129 29 100.0 32 ............................. TGCACACGCTTTACCCGTTGAACCGCTTCCGG 92068 29 100.0 32 ............................. TTGGCACTGCGCAAGTCGGCACTGCGCAAGTT 92007 29 100.0 32 ............................. TACAACAACGCGTGGTATGCTCACGCTTTCAC 91946 29 100.0 32 ............................. CAGAATGTGAGCGCCGCGTCAGGCTGCTTCAG 91885 29 100.0 32 ............................. CTGTTTCCAGCCGTTCCCGGCGCGCAATGCGA 91824 29 100.0 32 ............................. TGCGATCTGTTATTCGTTATCTCCCTGCCGAT 91763 29 100.0 32 ............................. ATAATAGTCTACGTACTTTTTCACCGAGTATA 91702 29 96.6 32 ............................T GTCCATTCCCTCACCCCACGATTGAACAACAA 91641 29 100.0 32 ............................. GATGGCCGATATCCTCGAGCGTGGCCCAGTAC 91580 29 100.0 32 ............................. GTCTTTTTACCTTCATCATGGGTATGATATTC 91519 29 100.0 32 ............................. GAATCGAATATCATCGCGGCCAGACAGAACCC 91458 29 100.0 32 ............................. ATAATATTGAATCTGATATTATTGATGATATT 91397 29 100.0 32 ............................. GCCGTTCATATGTGGTGGAATATAATACGCAC 91336 29 100.0 32 ............................. GCGGCTAATTGAAGAAATTAGCTGTTAGATTG 91275 29 100.0 32 ............................. CCAGCAGGAATTTACATCTGCCCTAAATGCGG 91214 29 100.0 32 ............................. AATATCAACTGAAATTAAGAGGCGGCGACGCA 91153 29 100.0 32 ............................. AGATACAAGGGTGTTGCGGCGGTATTACCACA 91092 29 100.0 32 ............................. TTGGCCGGAGGGAGACATTCGCACCATCATGC 91031 29 100.0 32 ............................. CGTCAAGTACCCCCTTACTACGCAACTAGACC 90970 29 100.0 32 ............................. CCGCTTTGACTCATCATCAGTTAGCCAGCGTA 90909 29 100.0 32 ............................. CCATATTCGTCGCTACCTTCAAAAGCTGCATA 90848 29 100.0 32 ............................. CGGCTCGCCATGAGAGGCCATCGTCTGAGAAG 90787 29 100.0 32 ............................. CCAGCAGGGGGAGACAGAGGAGTTGTTTACGC 90726 29 100.0 32 ............................. GTGAGTTTACTTTACAGATGGAAGAGCCTAAT 90665 29 100.0 32 ............................. GGTACGCGCACCATTAGCATAGGTAATAATAT 90604 29 100.0 32 ............................. GCGGGGCAAGCGGCTGAAACCCGCCATTGTTA 90543 29 100.0 32 ............................. GCTCACCGTCCGATCCTCATTAGTTCGCTGTC 90482 29 100.0 32 ............................. CTGAAACAGGTTTCTATGTCTACCCCGCGTAA 90421 29 100.0 32 ............................. CTATTGAGTCCTTCCCGCCTGACATGCAGATA 90360 29 100.0 32 ............................. AACGGCGACGGGTGGGATTCACACATGCCGGT 90299 29 100.0 32 ............................. GGGTCACGGAACAGTCCGAATGCCTTTTTTGT 90238 29 100.0 32 ............................. GGCCGGTGACGGCATCCTCTCGCAGACGCAGA 90177 29 100.0 32 ............................. GATGGGTTTCACATGGTTATACGCCTGTTTAA 90116 29 100.0 32 ............................. TGTGGTTAACCTCCCTGTCAATCCGGTGCGTG 90055 29 100.0 32 ............................. CCCATGTCACGCGCTACAGACAGTACCCCTTT 89994 29 100.0 32 ............................. GCTAATGGCCCTGGCACTTGTTGGCGCTGAGC 89933 29 100.0 32 ............................. GAGGCGTATTTGGATGCTCTGCGCATTTCCCC 89872 29 100.0 33 ............................. TACTCTTCACGCGTCTGCCAACCGGATCCCGGA 89810 29 100.0 32 ............................. TCACGACCTTGAGGCGATGGGTCGCACGCTGA 89749 29 100.0 32 ............................. GAAGAATCAATGAATTCTTACCTAATGAATTC 89688 29 100.0 32 ............................. GTTGGCGTAGTCGATTGTTCCTTGATGAAGAA 89627 29 100.0 32 ............................. GATAGGAATAACAATGCATATTATTTATACAA 89566 29 100.0 32 ............................. AGAGCGCACTCCGTCTGCACAGAAGAACTGGT 89505 29 100.0 32 ............................. TACCCGGAACAGGAAATCACCGGCAAAACGAT 89444 29 100.0 81 ............................. AATACATCTTTGAGGTGTACACCCGTACAGCAGTGTTCCCCGCGCCAGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 89334 29 75.9 32 NNNNNNN...................... AAATATCTGTAGTAGTCTCTGTAGTAATCTCT 89273 29 100.0 32 ............................. TGATTGCCATCCGGACGGGATTTAAAGCGCCC 89212 29 100.0 32 ............................. ACGACAACCAAATACGAGCGTAGCCACCGCAT 89151 29 100.0 32 ............................. ATGACCAGCCTCTATGACTCTGCGCGAGGTAA 89090 29 100.0 32 ............................. TGGGTGTACAACACGGTTGAAGCCTGGCAGGC 89029 29 100.0 32 ............................. ACGGGAAATTCACATACAGCAACGCGAGTGAG 88968 29 100.0 32 ............................. CGGCGGCAGCTGCTGAAGGTCGCAAGTCTCCG 88907 29 100.0 32 ............................. GTCATGGACGCATGGGGATTCCGACTTATGAC 88846 29 100.0 32 ............................. TAATCCACGTAGTGTTTTGGTCTACTTCCTCG 88785 29 100.0 32 ............................. GCTAACACAGACGGCCAGGTCGATAACGTCAT 88724 29 100.0 32 ............................. TGAAAAACAGCAGCGTTTTACGAAAATGATTG 88663 29 100.0 32 ............................. CTCATACCTCTCGCTTAGGGGGCACGTGGCCC 88602 29 100.0 32 ............................. CAAAAAAAAATATAACCTTCTTCTTAAAGAGT 88541 29 100.0 32 ............................. AGACTCATGGCGTCACCTCCGGCGCGATGTGC 88480 29 100.0 32 ............................. CCAGAGGGCGACTAATGTTTAGCGAGCACAGA 88419 29 100.0 32 ............................. CGACCTCATTACCGAGGCCGTTCAGGTTACGT 88358 29 100.0 32 ............................. GCGAGCTGCGCTTGCTTATCCCGCGCAATATG 88297 29 100.0 32 ............................. TACGTTACCGCACTTCCTTTCCTTTAGTAGCA 88236 29 100.0 32 ............................. TTCTTTGGAACGCTGCCCCCACTCATGTAGCC 88175 29 100.0 32 ............................. GAACGCATTATGGCCACCCGCGCTTATCGATT 88114 29 100.0 32 ............................. GCTGGCAGGGTTCCATGGGATGCCAGCCTTAA 88053 29 96.6 32 ...........................A. CTGTTCGACGGTCAACATCGCGCGGCAGGTAT 87992 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================================================================= ================== 75 29 99.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTCCCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTTCGCGCAGGCGTGTATGTCGGCGATACCTCACAGCGAGTTAGGGAAATGATCTGGCAGCAGATTATCGAACTGGCAGAGCAGGGCAACGTGGTCATGGCGTGGGCAACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAATATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCTCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGTACGCCATTTTTTTGCCCACCGTCACGGTGATGTGCTATGCCCATAATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAACTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGATTTGTATGAAACAGTAGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAAGGGTCCGCGCTGTTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAACGTGTTCCAGCCGATTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77541-76732 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJV02000006.1 Pectobacterium aquaticum strain A101-S19-F16 Pectobacterium_aquaticum_A101-S19-F16_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77540 28 100.0 32 ............................ AGTTGCTTAACCAGCCCTGATTCAATCAGCCG 77480 28 100.0 32 ............................ ATATTTTGAAATCAGCGTGGTACGCAGGCTGG 77420 28 100.0 32 ............................ AGCCAGAACGGGCCGCAATGGGCCATCCTGAA 77360 28 100.0 32 ............................ TCGCAGACATGACGGACCAGCAGCAAACGATG 77300 28 100.0 33 ............................ CTTAAAACGATTGTTATCTTTAATGTCACCAAT 77239 28 100.0 32 ............................ AGAACGAAGCGAAACGCTGGTAAGCATCTGTG 77179 28 100.0 32 ............................ GATGGTGGCGCATGGTAAACAGCATATCGTAT 77119 28 100.0 32 ............................ TTGGCGGCAAATTGCTCTGCTCTCTCGGCCAT 77059 28 100.0 32 ............................ AACTTTGGCGTGGGCATGGATGAACAATTTGC 76999 28 100.0 32 ............................ GCTGGAAGTGCAAGCAGATTGACAGCCGCACG 76939 28 96.4 32 ...........C................ TGAGCTGATGTTGGTGCGCCGACGTTTGATAT 76879 28 100.0 32 ............................ ACTCAGGGCACACGCCGGGCAGCAACGACAGA 76819 28 100.0 32 ............................ CGTATTCGGTTAGTTGGCTGGCGCTGCTTCGC 76759 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCCGTACAGGCAGCTTAGAAAGGCAAGCAGGGCAAGAAATCATCCAAAAGCG # Right flank : AGAACCAGTTTGTGAATATCCGCTCGTGTCTAGTTCACTGCCGTACAGGCAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCGTACAGGCAGCTTAGAAACTTTTTCGATGATGAATCAGGATGGTTGGCATGTTCACTGCCTATCCGGCAGCTTAGAAAGTGGTAATGGCTTAAAAGCGTTATTTTCATAAGGTATTCTCTTTTGAGGTCACGCATTTATGCCAGCCACGATCAACGTTGCCTGCCGACATTGCCAGCAAACAGAACCCGTCCGTAAGTATGGTATAGGAAAGGCAGGATTTCCCCGATACTACTGTCAACAATATGGTTTTTCACCACCGATGATTGGGGGCGTTACGCACGAGAAACCGAGTCAGAAAAACACCTGACAGGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //