Array 1 25881-24525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAL01000022.1 Porphyromonas gulae strain COT-052 OH4119 contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25880 36 100.0 30 .................................... TATATCTCGAGAAAAGAGTATTGTCTATTT 25814 36 100.0 30 .................................... TGCAGCGTGTGAGAGCGGAAATGCAGGTAG 25748 36 100.0 30 .................................... TCTTTTCATGCTCATTATTATTATCTAATT 25682 36 100.0 30 .................................... CCTTCTTCACCTTTTTTGAATAAGTATGTT 25616 36 100.0 30 .................................... TTCTTTTTCCTTACTTCCGATGTGTTGTAG 25550 36 100.0 30 .................................... TGGTGTAACAATTCATGGCGGTGGGGATGT 25484 36 100.0 30 .................................... GCAAAAGCTTAAGTTATCACACCAGCATCG 25418 36 100.0 30 .................................... CCTCTCTGGTTTAGAAGAGATAGTTTTACT 25352 36 100.0 30 .................................... CTGCGGTAAGGACTTAGAAAAGTCCATCAG 25286 36 100.0 30 .................................... TGGCTTTCATCTTTTCATTGAAAAGGTGAG 25220 36 100.0 30 .................................... TGGTGGAGATCAAATTCAAAACCAATTATT 25154 36 100.0 30 .................................... TGGTAGAGGGTTGGGAAATTTAAACCATAT 25088 36 100.0 30 .................................... AATCGGTCAAACACTTCATGCCACGCACGA 25022 36 100.0 30 .................................... CGGCCATCGCAAAGGGTGGTCTCTACCTCC 24956 36 100.0 30 .................................... CATGCATACGGAGGTGTTCTGCCACCTCGA 24890 36 100.0 30 .................................... AGAATGCTCCGGATAATATCTAAAATGAAT 24824 36 100.0 30 .................................... ATATTCTGTTATATAATCAATAGGAACATT 24758 36 100.0 30 .................................... TTCAGGCGTGTGCATGCCTGATTTGATTCC 24692 36 100.0 30 .................................... TACTAGAATGATATATTGAAATACTGTTCT 24626 36 100.0 30 .................................... GGCGGGCGAGTTCTCCGCGGTTCGTCTACA 24560 36 97.2 0 ......................T............. | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.9 30 GTTGGATCTACCCTCTATTTGAAGGGTACACACAAC # Left flank : GAGCGAAAACCTATTATTTCAGGCCGGCCTGCATCCGTGGATTCTTGTCCGAACTGACGGACGAATTTTATAAGAATGGCAACGGTGTTTTCTTGTCTAAAGAGATTATTTCCCGTATCTTTGAGTATAGAAGTATCGTTTACGGCCTTTTGCTTTCGGAGAGGCAGAACTCGGATGAGAGGATTGTGATGAACAAGCCCGAAACGGCCGAACGGATGATCCGTATTCATCAGGAGCTTACCCAAACCGTTAGAGAAGCCATCGCACTGAAGGGGCGAACTTTGAACTTTTGAGTGCGAACCGGCAGGAACGTAGGAATGATTTTTTGAGAGAAAATAGCATAAACCCGACCGTAGAGAGTCATTTTTTCAATCCTAATATCCTACTAAAATGATGATGACAGACTGTTTTTCACCGGCTTGCAGTGGCTCCAAAGCCTTACCGTCACTCACTTTCTGTGGAATGATGACTTCTCAATCGGTTTCAAATTCGATGGGGGT # Right flank : ATGATTCCTGATTGGTGGCTTGGGCGTTGGAATGTAGAGGGAGGGAGTAGCGCGTAGGGATTCTTTCGCGTTGGGGCTTTTTCGCTACATTTGCAGGCGGACGAGGTGCTCCCCTATTCGGTGAATTTGTGCCGGGAGTGCTTTCCCTTTTTATGGAATGACTTTGTAAACGACTAAATGAATGATAGATATGTGCTCCGATCCCTCTCTTTCCTGCATTCTTATTCGGCCGGTTTCGTTCGGCCTGTGTGGTTATATACCGGCGCGTATGGCTGATGCAAACCTGCTGTATGAGCGGTAGAGCCTGAGAGCCGTTTCGTACCCCTTCGAAATAGATGAGGCACCCGCCAAGTTCGTGCTCGAACTTGGCGGGTGCCTCTTTATTTATACCTCCCCTAAAGGCCTTTCGAGGTGTCCGATTTATATCAAATCGGCTTGCAATCTATATATTTATCGCAATCGATTTATATATAAATCAAAAACGATTTATATACAAAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATCTACCCTCTATTTGAAGGGTACACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 49023-53093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAL01000026.1 Porphyromonas gulae strain COT-052 OH4119 contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 49023 46 100.0 30 .............................................. TGACCCCGACACTCAGCGTCGAAGTCAGTG 49099 46 100.0 30 .............................................. TAGAAATGTTTGGAAAGAATATAGTGCTAA 49175 46 100.0 30 .............................................. TCCTTTAGACAATTAAGCCACCAATCAGAA 49251 46 100.0 30 .............................................. TCGCTTCGGCTTACATGATAAGCATCATTA 49327 46 100.0 30 .............................................. TTCTTTTTCGATATACTTCTTTATTTGCTC 49403 46 100.0 30 .............................................. TGCTGGAAACTCTTTTGTAGTCGTCTCTCT 49479 46 100.0 30 .............................................. CCTTTTGAATTTATCTTCACTGTTTATTCG 49555 46 100.0 30 .............................................. AGAGCTGTTTGGAAAGAATACAGTGCAAAC 49631 46 100.0 30 .............................................. ACTATGAAAGAATTGAAAAACTTTCAATGG 49707 46 100.0 30 .............................................. TTGCTTTTTTTGACTGTGTATCTATCTGTC 49783 46 100.0 30 .............................................. CCTCTTAATTTTTTGGATATATGGCTCTTT 49859 46 100.0 30 .............................................. ACATAATAGAGATATTTAAAACAACCTGAT 49935 46 100.0 30 .............................................. ACTCTAGATGCCGAAACAAACGGCCTCTGG 50011 46 100.0 30 .............................................. CACTCAACCGAATGGAATCGACCAATCGAT 50087 46 100.0 29 .............................................. CAATTGGATGACATAGAGTCTGATATAAA 50162 46 100.0 30 .............................................. ATCAGTGCCGCGGCACCCACCCAGGCCAAA 50238 46 100.0 30 .............................................. GGGAGAAATACCAGTCGGAGCTGGCAGACC 50314 46 100.0 30 .............................................. CGCGGAATATGACTCTGAAAGAGATCGACA 50390 46 100.0 30 .............................................. AAAGAGCGTCTTGTTCATACTTTTCTCTTT 50466 46 100.0 30 .............................................. GCCTCTGACTTCCCGTCTGCTGTTACATGA 50542 46 100.0 30 .............................................. CCTGTATACAGAGCATACAGGGGCGATAGC 50618 46 100.0 30 .............................................. GCTACGGTTCCTAGCAACAATTCATTGTCA 50694 46 100.0 30 .............................................. AAGTGAAGAAAAATTTGTCAGAACTGATGA 50770 46 100.0 30 .............................................. AACTATTTTTGTGTTATGTCGAGCCTATTC 50846 46 100.0 30 .............................................. ACTTAAAAGATGAAGGTTAAACCGCGTTTG 50922 46 100.0 30 .............................................. GCGGCGTCCACTATATATAAACTTGCCATC 50998 46 100.0 30 .............................................. ACAAAAGACACGATACCAACTTCTGTAGCA 51074 46 100.0 30 .............................................. AGCCTTAGGGGTCTTCTTACCCCATTGAGT 51150 46 100.0 30 .............................................. TTCCCAGTTCCTACTAACAGTTCGTTGTCA 51226 46 100.0 30 .............................................. GCACAATAGTATCTGCATTAGATATACGAA 51302 46 100.0 30 .............................................. AAACAATACCAAATGCTTAGAGGGCATTGG 51378 46 100.0 29 .............................................. TATTTCCATACCTGCGTCAGCTATATGCA 51453 46 100.0 30 .............................................. GCCATTCCATTTGTGCGAATAGTGGTTTGC 51529 46 100.0 30 .............................................. TAAGTTCAACAGATTCTAGTTTAATTTATA 51605 46 100.0 30 .............................................. AAACCCCGTACCGGGATGGGTGGCCGAAAA 51681 46 100.0 30 .............................................. GCAGGGAGGTGACCGAAATTCCCGCCACTG 51757 46 100.0 30 .............................................. CGTCCCCTTCATATCCCGAAATCCTTTGCC 51833 46 100.0 30 .............................................. ATTGCTTTGAAGGTTTGTTTATGACTATCG 51909 46 100.0 29 .............................................. ACCTCCTCGACAGTTGTTTTGGTTGTATG 51984 46 100.0 30 .............................................. GCACCACGTATCGGCGATACCACTTGCTCG 52060 46 100.0 30 .............................................. CGGACAAAAGAACGTGTTAGCGGTCTTTTG 52136 46 100.0 30 .............................................. GAAGAAAACTTCGTAGAAAAGTAAGAATTG 52212 46 100.0 30 .............................................. GCCTTGTTGAGATGCGGAAGGATGCTTACC 52288 46 100.0 30 .............................................. AACAAGAAAATGAAAGCAACAGTTAAACAA 52364 46 100.0 30 .............................................. TTACTCAGAGCGCATTTCACTGATGGCTCT 52440 46 100.0 30 .............................................. GGATTGTATTCCCTTTCGGTATCCATGCGA 52516 46 100.0 30 .............................................. AATGCAGAAGAGATAATAGACAAGTGCTGG 52592 46 100.0 30 .............................................. ACTTATGAAGATGACGATATCTATTGTCAA 52668 46 100.0 30 .............................................. GCATCTCGCACAAAATACTGCTTATATACC 52744 46 100.0 30 .............................................. GTCTATCATCAGCTCTTGGATCATATTCGG 52820 46 100.0 30 .............................................. CAGGTATTGGGTATGTTGTCTCAGATGTTT 52896 46 100.0 30 .............................................. GTGAGGTTATTGACTGTATGGGTGGTGTCG 52972 46 100.0 30 .............................................. CCCATAGAGACTCTTTTGTCTTTTTCTGAA 53048 46 97.8 0 .............................................C | ========== ====== ====== ====== ============================================== ============================== ================== 54 46 100.0 30 GCTGTGCGTTGCAACAAAATTACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCAATACATATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGATACTGCAGCCGACAGGAAACGTGCAGCAACCTTTCGCAAAAACCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCCATCTATATTAGGCACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGAGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCGGCCATGGAGATCATTTGTGGGAAAGGAAGAGAATATTATCAGCCGCCCCTCCAACTTGAGCTTTTTTGAATATATCCTAGCATCTTTTGCGGAATTAACCCTTTTTATCTGGGGTATAGAAATTAAAAAGCCGAGATTTCTCTCGGCTTTTCGGTTACACACAGATGTTTTTTTCTTTCTCTCAATCCCTCTCTATATCCTCTATTACAGGTGATTACGGGGATTCT # Right flank : CGAAAAAATGGAAAGCACAAAACCCTGAAAATAATAATCTACTCAAAAATCATGCACCAAAAAAGTTTTCAACAACGAAGATGAGTTTGGAATGATTCCAAATAAGCATCTGCGGAGAAAAGAAAAACGAGGCAAAAGTAGCGAGGAAATGGACTTTCACGGACTAAAATACGAATTAAAACAAGCCGGACAACAATCTGTATATAAAGCGTTTTCAATTTGTATATAAATCGTTTCTGTTTTATATATAAATCGTTTTCAATAAATATATAGATCGTAAGTGATTTATATATAAATCGCAGACCCCAAAAAGCCTTTTCCGAAGTCGGAATAAAAGAAGCACCCGCCGAGTTCTACGGAGAACTCCGACGGGTGCAGTCCGGATATGTATGTGGTGGGGCCTATGCCAAGATGCTATCCTTTTGCATGTGATTCAATGTAGCTGCACGATTCCGCTCTGCGATCTCGGATCGGATCGAGGGCTGTCGCTGTACCGAGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAATTACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 208571-204861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAL01000015.1 Porphyromonas gulae strain COT-052 OH4119 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 208570 30 100.0 35 .............................. GTAGAGGGCTTAGGAGAAGAGGTGATCGTGCGAAA 208505 30 100.0 37 .............................. TCGAGAGAAGCGACAAGAACATACGGATTCTTCAGCA 208438 30 100.0 35 .............................. AAAGGAGCCTAATACAATTCGCTTCATATAATCCA 208373 30 100.0 36 .............................. GCAGATACGACAAACTGTTGTATCTTTGCAGTGTCA 208307 30 100.0 34 .............................. CGGATCCGCGTCTTGTTCAAGAGATAAAGAATGC 208243 30 100.0 37 .............................. GAGAGGAGAAATCATAGATGATGAACTGGATAGGTTT 208176 30 96.7 37 .............................C TTGTATATCTTTCAGTGCCTTCTAAATCTATAAAAGT 208109 30 100.0 36 .............................. AACGGAGGGAAAAGATTATCGCCAAAGCGAAAGAAC 208043 30 100.0 36 .............................. AGATTCGACAGTCTCCAATGCTTCCATAAATAATCG 207977 30 100.0 36 .............................. TAGCAAAGAAAAAAAACCGCCACAGATCATTACCCT 207911 30 100.0 36 .............................. CTGTGTGAACTATATCTACAATGAGGTGCGAAAGTC 207845 30 100.0 36 .............................. ATCAGAGTAAGGCCTCTGCGGAGTATAGCATTGGTA 207779 30 100.0 35 .............................. GGCTGAAGAAAAAACTTACACCCAAATCCAATACC 207714 30 100.0 36 .............................. TGAGTAAACAGGTAAGAAGCCTATAAAGTTCATTAC 207648 30 100.0 36 .............................. TCTATACATCTGTCATTTTCTAGAAGACTCTCTCTA 207582 30 100.0 35 .............................. AGAACAACGCGAGGCAGCCGCTGACGGTTTCGGGA 207517 30 100.0 36 .............................. ATAATAACCTCTTAGGCAGTATGCCAACCGAAAGAA 207451 30 100.0 36 .............................. GGTTAAAGTAGTTCCTTATAATTTCCGAGTTAATAT 207385 30 100.0 36 .............................. CAGATAGCTTGGTATACTCTCTCCAAGTACTTCAGC 207319 30 100.0 36 .............................. TATAGAGAGCGAAAGCAGGATTCGCGCGCTTCCGTT 207253 30 100.0 35 .............................. TTTAGCCCTAACATTCCGAACGTCACCAAGAAACA 207188 30 100.0 36 .............................. ACCGCTACCTCTGGCCGGAGACTCTCCGAGTTATTG 207122 30 100.0 36 .............................. TATGGCCGAGCGTTATGGCTCATTCGGGAATTTCAG 207056 30 100.0 37 .............................. GCACTTGTACAGGCGGGGGAGGAGCAGGAACTAACAA 206989 30 100.0 36 .............................. TAAGAAAAGAATACGATTCATGCCTCTGCAATCGCG 206923 30 100.0 37 .............................. CTTCAGATTTATTCCAAAATATGGTAAACGGTCTAGT 206856 30 100.0 36 .............................. CGCATGTGGCAATGGTCTCGATTCCATTCCACTTAG 206790 30 100.0 35 .............................. CCGCAGAAGCATTGCGGAACGCGCTGAAGGAGAAG 206725 30 100.0 36 .............................. CGGCGTGAGGAAATACTACGTATTGACCAAGAATAT 206659 30 100.0 37 .............................. AGTCTCAGACATGAAAATAACAAGAAACTAAACAAAA 206592 30 100.0 35 .............................. TTTGCAGTATCTCCTCTTGGACTTCTTTCCACACT 206527 30 100.0 35 .............................. TACATTTTTATAAATCATTTCTCTCGTCTTTGTGG 206462 30 100.0 36 .............................. TACTCAGTGATAAAGTCATAAGAGAAGAGTCTATCA 206396 30 100.0 36 .............................. AGGAGCTGGAAGAGGCTTACAGAAAGAAGCGGCAAC 206330 30 100.0 35 .............................. GATATGAAAGAACATGAGCCTTTTGAGTATGTCGT 206265 30 100.0 34 .............................. TGAGGATACTTTTCTGTGTGTGCATATACATACG 206201 30 100.0 35 .............................. GGTCGAGTTAAAAGGAAAGGCAATGCGCGTCGTTA 206136 30 100.0 37 .............................. ATCTTTGTCAGATTCATCCCCAAAACAAAGAGGAGGA 206069 30 100.0 36 .............................. GCTATCTTTGTAGCAGAAACACTGGATTAAATCAGA 206003 30 100.0 36 .............................. CTTGTATAAGTATCTAAGGCATCTGTATATAAGTTG 205937 30 100.0 34 .............................. TTCCTTTACCCCAACCCTTGCAGAACTCATCTCC 205873 30 100.0 36 .............................. CCCTGTCGGAAGGTCGAAGGGGCGCATCACGCCCTC 205807 30 100.0 37 .............................. AAGTTGATGAGTCTTCTGAGTATGGGTCCTTGATTCA 205740 30 100.0 36 .............................. AAACGCCAAAGGAAACGCTGAAATCCTTTCTCACAA 205674 30 100.0 36 .............................. ATATAAAGAGGGCTTTATATTCTTCAATAAATCCAT 205608 30 100.0 35 .............................. GCGATAAATTTTGTGTGGCGGCGTAAGAGTAAGAC 205543 30 100.0 36 .............................. CGCAGACGCGTATCCGCTTGGAGGCCAAGAAGCAGC 205477 30 100.0 36 .............................. CGATGATTTCCTCGGGGTAGAAGACGGGGTTTCCCT 205411 30 100.0 35 .............................. CCGATCAGCTGCATGATTTGGTCGTTGATGGCATC 205346 30 100.0 34 .............................. TTCCTGATCCCACACATTCAAAGAATCCTACGAG 205282 30 100.0 35 .............................. CAGCGGACATTCGTCCGCAAGATGGCCCTGTGTTA 205217 30 100.0 36 .............................. TCTATTGTTGTTAAATCTTTTCAAGTGATGCCGTGA 205151 30 100.0 35 .............................. TATTTGATTAAATCAAAGTCGTAAGCAAACACGTA 205086 30 100.0 36 .............................. GGGTATGATAGGCGGTTTAGCTTTTGGAGGATTTTA 205020 30 100.0 36 .............................. GTGGACGAGGCCGGGAACGTGGTAGACCCGAACCTC 204954 30 100.0 34 .............................. TACCGACATCACAGACCAATACAACCAAGCCACA 204890 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 57 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : GACGACAGAATAGTGGGGATGTATCGCACGGAGACTCCCCAGCGAGGAACGGCTAAAGCCTATTCGGGATTATACAAGAGAGAGTTTACGGAAGAGGATAGCGAAATCTGTATCATCAAGGATGAGAAGAAACAACCGCTCCTCACCATCAACGGACTTCCCATAACTGATTGGTGCGAGCAGAAATGGAAACAACTCATCAATCGCAACCGCTCGCAACGGCTGTAATTGCTTTTTTCTTTCACTGACAAGAAGAAAAACAAGAAAAGACGCTCACTTTCCCTCGCAAATATGTACCTTTGCAAGTAGTAAAAATGAGCGTTCTTTGGCTATTCAAAACAATGTGCCTCAATGCACTCCGCTCATTTCTAAATCGTTACCTATCCATCTATCCCTAAATGGTAACACTCTATTCTTCAACAAGATAGCTCGCTAACGAAAAATCTGCGCGGTGCAATTGAAATTATGGCCGAGCGTTATGGCTCATTCGGGAATTTCAG # Right flank : CCGTCACAAATATAGGTTTTTATGTTTGAATGTGAGAGGGTTACTAGAAAGCGAAACCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCGAGGGGTGCGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGAGGGTTAATCATGGCAGAAGGCTGGACGAATTTGTTCGAATCGACGCTTCAAAAGATAGATGAAGGGAACTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGCTTTTCAGTTCTAAGAGTTTGACATCGGAGATTTCTCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 218971-218744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAL01000015.1 Porphyromonas gulae strain COT-052 OH4119 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 218970 31 87.1 35 .T........T.C.C................ TGCAGTCCCTTAACGCCCCCGCCGTTCAGTTCGAG 218904 31 96.8 34 C.............................. GATCTCTTAGCATTCGCGCGGCATCGGGAGCTTC 218839 31 100.0 34 ............................... AGATTGCAAGCGACTATGAAGCCGGTGTTGCCCT 218774 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 96.0 35 AGTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : ACACCTGGGGTAGAGCGATATCGTATACGGTGTCGCCCTTCTCCACGGTGACCACGGTTCCGTGCCGCAGCATGGAATCCGGTATCCCTAAGCGCGGCTCCTGAGTGTACAATCGGCTCAAAGCCAACAACTTCAAACCCAACAAAAGCAAGGCTTTTCTATACATGTCTCAAACTTACAAAAAAACGACTGAGACTGCTTATACAATCGCAGCAAAAAAATACAATCGATTGATTTTCAAAATATTCTATACAAACCCACAACTCCGCATCCATCCCGATATTCTTTGTAGACCGTTTCCGGATATTTCCTCATTATCGCCAAAGAAATCCTTTTGACAATGGCCCTCTCTCCAATTATTTTGACTCCAAAAATTCCCTGTTCTATAGGCTCAAAAACGTGGCGCGGGAATTTTTTCGGTTTGGTTGGGGAAGTAAAAAATTCTCGTTAAGGAACAATTGAAATGGCATGCAACGGCAAGGTTCTCCGTGACGGAGCTA # Right flank : CGAGCGGGATTTCAATAAAAAGGTCGAGAGGTTTTGTTTTAATTCCTGCGCGGAACTATCAGAGGAAAGGGCATTAGAGAGAGGATGAGAGGTAAGTAAATGGAAATGAGAGGGATTTTCGCCATATCTCGGTGGTTTGCATTGAGGGATAAAGTGCAGAAAGCGTGGATTTATGCAGAAGTTCCGTTACCAAATCATTAGTCCATTCTCCGAATGGTAACGAAGAGGCAGGAGAAGGTAACCGACAGAAGAGTATTCGGTAACTCACCTTTCCGTCGTTACGGTACTTATGCTTTGTACCACAATGTTTTGCGTAGCTGAAAACGCTTCGGTAACGGGTAACTTTGCCCATAAAAAAGAAGCGTATGCAAACAGACAAATTCAAGGTGTTGCTCTACCTCAAAAAGAGCGGATTGGACAAATCGGGGCAAGCTCCAATCATGGGGCGGATAACGTACGGGCAAACCATGGCGCAGTTCAGTTGTAAGCTATCGTGCGAC # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 3 315273-315601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAL01000015.1 Porphyromonas gulae strain COT-052 OH4119 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 315273 37 100.0 36 ..................................... CGCGCTTTTTGCAGGGAGTTGGTTCAGCAAAAACCC 315346 37 100.0 38 ..................................... TTTGACTGTGGTCCATTGGTCATTAACCCAAACAAGGA 315421 37 100.0 35 ..................................... TTGATAGTTACTATGTTAAAGTAGCTCACCAAAAT 315493 37 100.0 35 ..................................... ATGAATGGTGCAGCAGCTTTCATCACGATATATAT 315565 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 36 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : ATGCAGGGGTGAAGTTCTCTTCGATGCACTATACTTTCCAAGGCAAGGACTATCCATACGGTTCTTTCCCGACAGAGAGCGAATTGGGAGCGCATCTGTCTGCCATCAAGCAGGATATTTTGGGTCGTATCCGAGATGTTGTAGAAGGGTAAGAGCTTAGAACCGGCTTCGGAGGTCTCGGAAGTCTCGGATTTCAATTATTCCGATCGGATTTTCTCGAACCGCAATTGCTGCGATTGTGGCGCGTGTTTTCGGGAAAAGTGGCGCGGGATTTTTTTCGCTGTGGCACGGGAAGTAAAAAATTCTCGAACCACAGCGAAAAAAATCTCGCGCCACGTTTTTCGGAGCATCGAAATAGAAAATTATGGTGCGCAAACGGCCTTGGCTCGCACACAAGCGGAAAGCTGTGATTATGTGCTCTTATCTTGTGCAAAACACAATATTAACCGCTCCAAAATCTAACATGGAAAGTCCAAGTGATGATGAGTAGAGCATAAAGA # Right flank : GAACTTGAGTGACTACAAGTTACGAATAATCCCAAACGTAACGCATTGGCAGAGAACGATTCTATTTTTTTCGAAAATGCAAGTTGAGAAATGTAGCTATAACACCATTTTTGCTGTTGAGCTGATTATATCTTATTGATATACAATCAGATTAGCTGATTTTCTATTTTCGAAAATCAGAAAGAGGGAACCTTCGTTTTTGGCATTTTCGAAAATAGAGAAAGACACCATTTGATAATCAAACACTTACAAATAGCGAAACGCCCCTGTTTTTCGAAAATAAAAGTCCCAATTCCGGTTTTCTCCTATTTTCGAAAAACGGGAGAAAAGAGTTGTTTTTGCAACCGGCTGATAATCAGTACGTCAAAGAGCGATGCGTGGTTCGAGTTTTTTCGAAAAACTAAACCACTATACTTTTCCTTTTCCTCCGGCTCTTGGGTGGGGTCGGATGTCCGCTCATCCAAGCTGCGGCATAACAATGCTGACAGAGAGGAAGAAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //