Array 1 1547-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSDI01000026.1 Ruminococcus bromii strain CF01-14 CF01-14.Scaf26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1546 36 100.0 30 .................................... AGCTATTATAAATAGCAAGGCAAATAAGGC 1480 36 100.0 30 .................................... TGGAAGAAGGTAGTACAGCAAGTGTATTGA 1414 36 100.0 30 .................................... GGAGTTGCTGAAAATCAAATTACAATTGAG 1348 36 100.0 30 .................................... GAGGGACTTCTCAAACAGCTTACGGGTGAC 1282 36 100.0 29 .................................... CTTTTGTCATAATTATTCTCCTTTCGGTG 1217 36 100.0 30 .................................... TTTTCAAAAAAGAAAACTGCGTGGTATTAT 1151 36 100.0 30 .................................... TCCACCAATCGTAGCAAACCACAAAGATAA 1085 36 100.0 30 .................................... CATAACTTGAAAGGTACATGCTCCACCGTC 1019 36 100.0 30 .................................... TGTTACAATGGCTTAACGGGCGGCGGTGTC 953 36 100.0 30 .................................... TCTGTCCTGTCGCAGTATTTTGCAACACTT 887 36 100.0 30 .................................... GACCGTTTTTACATCGGCGTGTACTGTCTA 821 36 100.0 30 .................................... CCCTCGGCGACACCACGGTCAGAGAGGACG 755 36 100.0 29 .................................... TGTAATGCTCGGTGCATTGTCTTGTCAGC 690 36 100.0 29 .................................... CGAAACACCGTGCGTTCGTCGGTATAGTT 625 36 100.0 31 .................................... TTGACGGTAAAAATGAGCGACCGACCGAGGA 558 36 100.0 30 .................................... AACACGGAAATTCCGAAGATACAACAACCG 492 36 100.0 30 .................................... AACAAAAAGCGCATATATGTTTATTCATTC 426 36 97.2 31 ...................................A CAGCTTTGGCACAATGGACGTTGACCGCCTC 359 36 100.0 30 .................................... TGAGGGTATAATGAAATAATTATACAATCG 293 36 100.0 30 .................................... TTATCTTTTCTATTAATATTGTATCACATT 227 36 100.0 30 .................................... TGTGTCTTTCAACATAACACGCTCTCTTGC 161 36 100.0 29 .................................... CATTAACGGTTCTTTGAGCAAAGTGTATC 96 36 94.4 0 ...............................G...T | T [63] ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.6 30 GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Left flank : TTTTTTTGAAAACTTGTGTAATACAAAATATTTTCCGCAAATTTCAGAAATTAAAGCTTTATGTGTGAGCTTGTGCTGCGAGCTTTCTAAGGAAAATGATTATGATTTTCAGTTCTGCGAAAGTATCGAAACAATGGCATTAGTAAAATTGTTTTCATTTGCGCCTGCAGATGCCTCGGATGATAATGTCGGTCATCTTTTAAGATATTTCAAACTTATGAAAGAGTATCTTGGAATAAAGTGTTTTATTGTTCAAAATTTGCATATTTATCTTGATGACAGTGAATGTGAAAATCTTTTGGAATCCGCCGTTATGCACGGTATATATTTGCTTAACATTGAAAACTCAGTGCCGAAAGAAGTTTCTGAATACGAAAAACTTGTTGTGATTGATAATGATTTGTGCGAATTTTATTGACATTCATTATACAAATGTTATAAAATAACCTTATAGATTTGCCGTGCACAGTATAGTGGGTGCATTTTATTTTCAATTTGAG # Right flank : TCTATAAGGTAGTAAAACGAGGGACTTCTCAAACAGCTTACGGGTGACGTTTGAGAATAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 12-704 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSDI01000004.1 Ruminococcus bromii strain CF01-14 CF01-14.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12 36 100.0 29 .................................... TTTCAATGAATTTCTGTTCGCTCATACCG 77 36 100.0 30 .................................... AACGGGCAAGTTACAGACATTGCAAAACAA 143 36 100.0 30 .................................... CTGAATTTCTGCGAGTATTTCAGCCGATAG 209 36 100.0 28 .................................... GTCAGCAGCGACTTTGTCAACCTACTTG 273 36 97.2 29 ...................................T TCATAAAAGTCACTCATATATGCAAAAGC 338 36 100.0 30 .................................... CAAATTCAAAAACGCCAAAGTCCTTATTTT 404 36 100.0 30 .................................... AAGGGCAGTCAGTACAATCAAGTTTACAGG 470 36 100.0 30 .................................... TACATACTGTAAAGGGCGTAATTGTAAAAG 536 36 100.0 30 .................................... TAATATTCCTCGTCTGCAACCAAACACATT 602 36 100.0 31 .................................... ATTATCTTAATATATCACTCTCGGATGATGA 669 34 88.9 0 .......................T..--.......T | A,C [690,702] ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.7 30 GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Left flank : TACAATGTACTG # Right flank : TTTTACTCGTGGACTGTGAAAAAACAGCATTGCAAAAAACAATAAGGCACATAACCGTTATCACTTTCGGTTATGTGCCTTTTGTAGTTTAATAAGTTTGTTAAGAATACCACGATTGATTACAGTCCAAAACAAGGAAGATTTCAGTGCGTTAATTTCCAAAGTAAGTTCCACCATAGAAGTTACTTTGGAAATTAACTATTTACTTTTTGTTTAAGTTTGCGGTAAATATGAATTGTATAATCCGTTTTATTGTGTTATTATGTAATAAAATGATGTGCAACATTGGTGTTTTGAAAAAATTATGTTGCTGAAATTAAACTTGAAATAACTGACGGGTGGCATATGGTTCGCAAAGTTGACAAAACAAAGCTTCTGACTGTTGTCGGGATAATTATATTCCTGTTTGGAGGTGCGGTGAGAATTTTTTCTCATCTTACTTCCTCGGCGGACAATTATATTGAAAATTTTGATGTTATTATCTTTTCGGGGCTTATTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 101277-100552 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSDI01000004.1 Ruminococcus bromii strain CF01-14 CF01-14.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 101276 36 100.0 27 .................................... ATTTAACCGTTAAGTTTGCAATATCCG 101213 36 100.0 26 .................................... AGTATGACTCAGATAATATCGACCGA 101151 36 100.0 27 .................................... AATAACTAACTTTTCGACATATGTAGG 101088 36 100.0 27 .................................... CAAAACAGTGGGCAAAAGCAACGGCAG 101025 36 97.2 27 ...........................T........ ATTTAAGTGCATTGGCTACATTTGTTG 100962 36 100.0 27 .................................... TTCGAGATTGATTGATTTGTCGAGCAA 100899 36 100.0 26 .................................... CATACAGATTTCTGTACCGATTTTTT 100837 36 100.0 26 .................................... TCATTTTTACGCCGTCCTTTCGTTGA 100775 36 100.0 26 .................................... GCAAGAGTCTGAACTTCTCTGACAGC 100713 36 100.0 29 .................................... AGTTCTATAACCTTAACAATGCAGACTTT 100648 36 100.0 26 .................................... AAACGGGTATTGATAAATTAAAAGGA 100586 35 88.9 0 ........G..................T..T.-... | ========== ====== ====== ====== ==================================== ============================= ================== 12 36 98.8 27 GTTTAATAACCCTATATAATTTCTACTATTGTAGAT # Left flank : TTTACGACAGTTCAAAATATGATGAAAAGAGCAAGCTTCCGTGTGATGCCGATGCAAACGGTGCGTACAACATTGCCCGCAAAGGTTTGTGGATTGTTGAACAATTCAAAAAAGCCGATAATGTTTCAACTGTCGAACCGGTAATCCACAATGACAAATGGCTGAAATTTGTTCAGGAGAATGATATGGCGAATAATTAAATTCCGACTCTTTAACACGGTACTGTCGTTAAATATCACTCCGACAGTACCGTTGTCAAGGCTTGATATTTGACACAGATAATAAAAGAGTATATAATCAGACTGAGAATACATAGAAAAAGTTTGGTTTTGCCAAGAATGAAGATTCCCCTTTGCTGATAGTCGGCTAACTTCTGCAAACCCAAGTCTTAATATTTATTTTTGTCCATATGGGGTTATTGAACAATGAAAAAGTTATTACAATCTCACATATGTTATTTAAGTTATTTTGAAATTTATGTAACATCATACAATGCAAGG # Right flank : TAGATAAAAAGGTTACTTACACCGATTAACAACAAATTCATTTTGCTACAAAAATACAACCTATACACAAACAAAAGCAGAGAGTCAGAAAGCTCTCTGCTTTTTATCGTTTTTTAACATTGTACCGAACCATTACAACAAAGTTACCTACATAGCTATGGGAATTATCATAAACAGAAAAAGTCACGACTGCATATGCAATCGTGACCGAGTTGGTGGAGATGAGGGGAATCGAACCCCTGTCCGAAAAAATCTTGCCAAGGGTTTCTCCGAGCGCAGTTGGTGTTTTAAATCTCCCTCGGTGCATCGCCCATCAACAGGCTATGCACTTTGGCAGCTCCTAAGCTGTGACAGGGTTCGGAGCGCTCCCCTGTTCACATTTACCTCTAATCGACGCCCCTTACACAGTCGAGGTACTCTGTGCAGGAACGAGCAGCACTCAGGCTGCTAAAGCAACTGTTTTGTTGTCAGTTAATTTTAAAGTTGCGGATTTTATGGCG # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACCCTATATAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 84125-84289 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSDI01000005.1 Ruminococcus bromii strain CF01-14 CF01-14.Scaf5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 84125 32 100.0 35 ................................ TGATAGTGATAGTATACATTTTGATGTCTTAGTAA 84192 32 100.0 34 ................................ GGACAGGGAACTGCTATCTGAACAATGGCCCTAC 84258 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 CTGGCAACCCACTTGTCTACGAGGATTGCAAC # Left flank : CTTTTTAGGTGTAGCGGTCTTTACTGCAGTACAAACACCTCTCTTCTGTGGGGAGCTCTGGTCAATAGCAACACGCTTTTTTGAGTTCCAACCCTTTAAGAGAGCAGGTGCCTTTGCCTTCTTCTCGGAAACCTGTCTGCCCTTGCGTACCAACTGGTTAAATGTAGGCATTATTTGTCCTCCTTTCAAAAAATATAAGAATTGATAAAACTGCTTTGCTTTTGCAAAGCCCTGTGAAACATCAATAATATCCCCAAAAACGGGCGCAATTACAGAATGTCCCACGATTAAACATTATAAACTATCCGCTCGCTTTTTGTCAAGCATTTTTTTGTAAAATTTAAGCGAGGCAGCTATAACAAATATTAACTGCTATTTGGTTGACAACATAAAAATGGGAAATGCACAATCTGTAGCATTTCCCGATTAAACTTATTTACTTTTTTGTCTACGAGGATTGCAACTTCGGAAGAGTGGGCAACACTAATTCCTATGGTTAT # Right flank : CTGCAAAATATTCGTAATTTGTGAGTGTTATAGTACTAAAGACCTTCTCAGTTACGGCGGCAAGTGCAAAAAGTACTTACACGGCGCAAAAGCACTGGATCTGATTCCCATAACATTTTACTATCGTACAAATTCACCTTGAATTTGCAACATTGATAGTTTAGGACATGCCCTGACCTTCTTTATTTTTGTGCAAACATATCGCACTTTTCATGTTCACTTATCATTCGCACCTATTATGCGATTCCATAGCTCGAAATATTTTTCCTTTCTCTCAACTTCACCTCATTTCTTATGTTTTCTATTTCTTTATCGTGTAATTTTTTAAAGCTGTCATATGTTTTTGAACATTTATCTAAATCAATTTCATCGTGTGTTTTATTACTGTTTTTTATTAAAAATGCCGAATACAAATCTCGCTGAACCTTGTCACCGTTTCCGAGTATCCGCCATCTGTCATTCAAACCGTGTTTTGTATATTCACCTGTTGTGTGGTCACA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCAACCCACTTGTCTACGAGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //