Array 1 117135-116253 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDK01000005.1 Lactiplantibacillus dongliensis strain 218-3 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 117134 28 100.0 33 ............................ TGGATTACTTGCCTGATAAAGTCAAGCATGAGG 117073 28 100.0 33 ............................ GTGTCGCCGGTACCCGCAGTGATAGATTCAACG 117012 28 100.0 33 ............................ TGAATGGCCTTTAACTCCCAACTGAATTGAGCA 116951 28 100.0 33 ............................ TCAATTGTGGGGTGGAAGCTATGAAAGTAGTTA 116890 28 100.0 33 ............................ CCAAACTCACCCATAATGGCTTCTGTTTTGTCG 116829 28 100.0 33 ............................ TCGTCGTCATCAAAGTTGTGAGAGCCCGTGATA 116768 28 100.0 33 ............................ ACTGCCGAGGACTTTTTGAATAAAGGCAACGGT 116707 28 100.0 33 ............................ CTCTTACCGTTAAGGTTCATCGTACCGTCTTGG 116646 28 100.0 33 ............................ TGATGGCTATATTGATGATGACGATAGTTTTCA 116585 28 100.0 33 ............................ CTGTAGTACCGGATCATTGGCGGCCATCTCTTG 116524 28 100.0 33 ............................ CCCTTTATTGCGGCATGAATCGACAAGGCATCA 116463 28 100.0 33 ............................ GACTGTACGGGTGCGGACTGTGATTACTCATAG 116402 28 100.0 33 ............................ ACTTCACAGCTGACTTAAGTGGTGTTGAAGGTA 116341 28 100.0 33 ............................ GTCCACTGGAACATGGTACTTTTCGCTAAATCG 116280 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 33 GGATCATCCCTACGTATGTGGGGAATAC # Left flank : TTTAGAAATGAGTCAAAATAGCATGCGCTTAAGCTGGTCATTTGAAGAAGTCGACAACCGTTTGAAGACGATTATGCAAACCATCTTCGCTCAATCGGTTGCGGCCGCTGATGAATATCAGGTTAGTGGTGATTATCTGAGTGGTGCTAATATTGCTGGCTTCACCAAAGTCGCTGAGGCGATGATGGCACAAGGTTTAGTGTAATATTATTTAAATTTGGAATGGCTGTTGAGTGTGAAAACTTGATGGCCATTTTTTAGTGTGGTCAGCTTAACCGGTATTTTACTGAATGACCTACGACTATTAATCAATGATAAAAATCATGGACAGTCTAGATTAAGTCGCGATTAGAAATTTAACACAAAAAGCTCATCCATAGTGACCATAGATGAGCAGACAAATTCTAAGATAAGACTTGCCCCTTACGTACAGATTAACTGAGGGTAACCCTACGTGTGGGGAATACCTGGCACCCTGTGGGCTAACATTGGCATAAAAG # Right flank : ACTAAAGAATCGTTGATATATCAGCATTCTAAAATAACAGAGTCATAAATTTCAATTAGTTTCAACTTCTAAATTATACAGCATCAATCATCTCTCAGCAAAAATGAAGGCTTCTTCAACCAAGCCCTACCAGCTTAAAAAGCTTTCAATTTCATCATATTTTTTATAAACTTCATAAACACCCATCAACCTGCCAACCACACATCCTAATTAAACAAATCCAAGACTTAAATCAAAACAAGCTAGCCCCTTCAAAAAAGTCTAGCTTGTTTTAAATCACCTATTCAATTTAAACTTTCGAATCCGGATAACCAGTATGCTCACACAATTGCGCATAGGTCTCATGCAAGGTCTTAGCGGCCGCATGCCAACCCACTTTTAATAGCGGCATCAACCGTAATGGATCTTCAACTGGAATATCATGACGATGAGCAAATTTAAAAATTGCCGGCAACACGTCCATGTCGGAATTAGCAAAATAATAATTACCCGCATCAGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCATCCCTACGTATGTGGGGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 63582-63915 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDK01000010.1 Lactiplantibacillus dongliensis strain 218-3 contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63582 29 100.0 32 ............................. GTATAACGCCAAGTACCGTAAGGACAAGCTAG 63643 29 96.6 32 ............................T GTCTGGAACGCGATTAAGACCGCTGCCGAAAC 63704 29 100.0 32 ............................. TTTGATGACAAAAAAAGACGCCTTAGCGATGG 63765 29 100.0 32 ............................. GTAGTTTAAATAGCCTATTAGCCGCAAAAGAC 63826 29 100.0 32 ............................. TCGTCAACTTCTTCGTAGTGCTTGAATTTCGT 63887 29 86.2 0 ......................C...TTA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTATTCCCCACGTATGTAGGGATGATCCC # Left flank : GCCTAGTACCAGCATCAAACCAGCTTTTATAAATTTTCTCATCTTAAAAACTCCTCCTTTTTAATAAATCTTATTATAGCATCAATCATTTACTCGTCATCGGACTACCGTTAAACTGGCTTATATCGCTCATTGTAACGAGAACAATTCATCGTTATGTATTGGCGGTAATCAAATTTGTTTATATTAACTCACAATTATTTTGGTAGGATAACGTCGTCCTATGTCGCTCGCCTTTACCAGGATTAAACGACAAAAATAATTAACTTTTGATAAAGAAAAATATGTATCTCATCACCATCAAACCATTACTAATTACAGATGGAATTTAATCTGTTGGAGAAACAATAAAACCTGTTCAGTTGAAAAAGGTTCTTTAAACTATTGTCAATAATTTATTGCTAGGGTATGCTTTAGACAATAGATTGGCTTAGGTGCAAACTGATTTATTTTGGCAGTTATGCAAAATCAGAATGCTGTTATATCAAGGATCTCTTAGT # Right flank : AAATGAAATCAATCAGCAAACAAAATTAACCACGTCTCAAATAACACTATTCACACGAACTAAGAATCCATCTTACAAGGCATTGTCATCGTAATTGTTTTCAAATAAAAATTGACAGTCCGAACGTTCTTATCTATAATTATATCTGTTGTTGTCATGGTAGCTCAACTGGATAGAGCATCCGCCTTCTAAGCGGAGGGTTGTGAGTTCAAGTCTCACTCATGACATATTCGCATAAATTAGAACACTTCAAAAAAGCAGGAATCCCGTTAAATCAACGTTTACGGTGGCTCCTGCTTTTTTGTTTGTGTTAAAAAACACTATTGTAAACTATTTTGCCCAATACTTCTATATGTATAAACAAAAAAGTGCAACCAGCCCCAGCCAGTCGCACTTCCTTTAATAATTATTTTCCTGTCGTTCTTCATTCACTTGGTTCTTAGCTTCAAAAGCCGCCTGAATCTCGTCCTGCTTAAAGCCAAAATCAACCAATCCAATCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTAGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 104133-103922 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDK01000007.1 Lactiplantibacillus dongliensis strain 218-3 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 104132 28 100.0 33 ............................ CTGAATGGCAGTTAAACGATTGCATCATCGACA 104071 28 100.0 33 ............................ CCCGGAATGGCACCTCACGCAACGCTAGGCCGG 104010 27 96.4 34 ...................-........ CTGGGACTAGCCAGCGGTATAGCAAAGGGAGTCT 103949 28 92.9 0 G............T.............. | ========== ====== ====== ====== ============================ ================================== ================== 4 28 97.3 34 TGTATTCCCCACACACGTAGGGATGATC # Left flank : GACTGAAGATGAGATTATATCAATTGGAGCAGTTAGACAGTCAAAAGATGGTCAGATTGAGCCTTTCTACCAGTTGATAAAGACTGAAAAAGCCGTTCCGGAAAAGATTGAAAGATTAACTGGAATCAACTCTGGAATGCTGCGTTCAAAAGGAATTGGTTTAGAGTCAGGATTAAAGATGCTACAAGAATTCGTGGGCGAACTGCCAATTATTGGCTATAATTTACGGTTTGACGAGGCTTTTCTAACTAATGGATTTAGAAAAGTTGAGCAGTCAGACTTATCTAATCAAATGATAGACTTGAAGCCAATAGTTAAAGAAGCCAATCGATTTCTTGATGGCTACCAATTGAAGACGGTATTGTCTGAATATAATGTGAAAAATGATAAGCCACATAATTCGTTATCAGATGCAAAGGCAACACTTGAGTTAGCGAGCAAACTGATTGAAAATGGTGTTTTGAAAATTTAAGAACCGCGGTATGACGGCGATCTTTTAA # Right flank : GTGACATGTGTCGCGAATATATTCTATATAAATGTTATGGAAAAGACTTTCCTAGCATTTATTAAGTTGTAACGGCAAAATGAGCATATTTACAATTGTTAAAACGGTGTATGATAGGTGCAGAGTGTATTAAAAGTCAACGTAAAGCGAGGGAGTTGTGATGCAAGTTAAATTGGACGATGTGATGGAAGCGGTCGAAATGGCCAATGACGAAAGTCGTTATTACTACAATAAGGTGACTGGTGAGGTAGCAATGGTCATGTTAGATGCGGACAGCGATGAGATTGAGGCGCACTTTGATCAATATCTCAGTTTACCTTCTAAGTATGACATCAATGATTACCACATTATGGAAGCCTTTATTTGGCAATTACCGGATGGCAAACAGCAAGCCCAACTTACACGCAGCATTAGTGGGCGTGGGGCGTTTCGTTATTTTCGTGATCGACTCGCTGACTTTGGCATGACGGATCAGTGGTATCGCTTCCGTGATGCAGCTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTATTCCCCACACACGTAGGGATGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 114779-113955 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDK01000007.1 Lactiplantibacillus dongliensis strain 218-3 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114778 29 96.6 32 ............................C CTGACCTTGAAGAAACTCAAAAAGAAATTACC 114717 29 100.0 32 ............................. ACAGCATTCAAAAATTAGGATCAGCAATTGGG 114656 29 96.6 32 ............................C ACAATCTTGAGTTCAAACGTGGCGGCCAAGAG 114595 29 100.0 32 ............................. TAAAGGACTTAAAACCCGGTGTCACTAAGCAC 114534 29 96.6 32 ............................C TAAGACGTTATCGGCGTGCTTCGCTGACTTCA 114473 29 96.6 33 ............................A AGTGTGCTGGTGCGTGGTCGATGTCGGCGTCGA 114411 29 100.0 32 ............................. GTCGACATGGAAGTTGTCGAGTTGACGCTACT 114350 29 100.0 32 ............................. TGCCGACCGTACCAGTGACGGCCTTATTTAGC 114289 29 96.6 33 ............................C ACGATCGTCTAGCAACTTATCATCGAGATTCAA 114227 29 100.0 32 ............................. GCCCGCCACTGTAATCTTGCGAGTTGAGCGCG 114166 29 100.0 32 ............................. TGGCCGGCTCGCTTGCTTGATTGTAGCTGGCG 114105 29 100.0 32 ............................. ACAGCAGCATAAATTAAACTCTGTGGGGCATT 114044 29 96.6 32 ............................C GGGCAAAGCCAGCCAGTTAGTCAAGGATAAGT 113983 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.0 32 GTATTCCCCACGTACGTAGGGATGATCCT # Left flank : CGTGGTGATTAAAGTATAGGTCTCCATGACCTTTTTGTGTACCTTACCGGGTGTTGCACTTCAATTTTAAATCCGGGTTTTCTTAATTAGTGATAAATTGGTTATTGTAGAATTGCATTACCAGTTGAAACTATTTAAAAAATCAAACTAAAGGAAAACGGCAATTCTTGAAATTAAGAATGCTGTCATACCGGGATATTTTTAG # Right flank : AATTGCATAGAGTTATGAAAAAGACAACATTCTTTGAAAGATTGTTGCTTTTTTGTAGTCAGTGAATTAATTAGTAGTTAGAGCTATTTAAACGTGGGTATTTAATAATGCGTTTGTATAAGTTTAGTAAATTTTGTATAGATTATGTAAACAAGGATATATAGTTAACGTACTATGATATATTTACAGGGTAATAAGAGCTTAGTGATAAAAGAGCAAGTCTCCGATTTATCAAAATCGGTATATTAGAGTGTATTAAACACGCATCTGTTATGGAGTATTAAAATGTACAATACTGGTTTCTGCTATATTTTTTATTTCACTTAAATTACAAATTAGCAAATGAATAAATTTTATAGACGTCAAAGTAGTCATTGAATAGTGAAAGGAGCCGTACATGCAGTGATGAATATATCCAAACAGGCTGCAAGTCTATGGGCCAAGAAACGGTCGGAAGATGGATTTCAATACTGGTTACCACTGATTACACATTTAATTGA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTACGTAGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTTCGTGGGGATGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //