Array 1 30357-31404 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTNU01000004.1 Escherichia coli strain SC_F25_1 NODE_4_length_183615_cov_35.1021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30357 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 30418 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 30479 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 30540 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 30601 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 30662 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 30723 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 30784 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 30845 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [30869] Deletion [30886] 30887 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 30948 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 31009 29 96.6 32 .......T..................... TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 31070 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 31132 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 31193 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 31254 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 31315 29 100.0 32 ............................. GAGCCTGACAAGACTACTGAGGCCGTTCTGTC 31376 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTAATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56954-58202 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTNU01000004.1 Escherichia coli strain SC_F25_1 NODE_4_length_183615_cov_35.1021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56954 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 57015 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 57076 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 57137 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 57198 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 57259 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 57320 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 57381 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 57442 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 57503 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 57564 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 57625 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 57686 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 57747 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 57808 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 57869 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 57930 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 57991 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 58052 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 58113 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 58174 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGATTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //