Array 1 28622-28350 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQPA01000103.1 Levilactobacillus brevis strain WIKIM12 Contig103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28621 29 100.0 32 ............................. GCGTATTATTTTGTTTTCTTTTCTTATTCATC 28560 29 100.0 32 ............................. TAATCATGACATAGAGAAGAAATACCAGAAAG 28499 29 96.6 32 ............................C AGAAGTTAAAGTCGTATATTTTTTGGTTGTCA 28438 29 100.0 32 ............................. TGACGTAGCCCAACGACTGCTTGATTTTAAGC 28377 28 79.3 0 ....A.................C-..TTC | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GGCACAAAAAGAATTGGCGGAGCGCTTAAATTTGACGGCGCAGTCAACCGCGGAATTCGTTCGGAAATTGGAAAAAAAGGGATTCGTGACACGAATGAAATCTCCTACGGACCAGCGAGTTACCGTGGTGAGTATCACGGATGCTGGGCGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACGATTTTAGATGATACGGAGTTGGATCAACTCGCGCATATTTTAGATAAGGTTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGCGAAGATCGGTAGGCTTGGTGTCAGTTTCGGCGATATTTATGGGGGCTGGTTTATTTGTTAGACAACCATGACGACCTGCACTCAGAAGCAAAGTGATGAGAATCGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGTTTTCTTTAGT # Right flank : CGCTACTTCCATAAACTACTAGTATTAGCGGAAGTAGCGCTGTCACAAGCAAAGAACTACCACAACTTGCAAGGTAATCAGGCTCAAAAACCACCGCACAATCATCAGCCATTTGGCCTAACAATTGTGCGGTGGTTTGTAGTGTCGAGATTATTTTTAATTAAGCGGCATTTAAAATCCACAAGAACAAGACGAAGACAACCGCCAGCCCGTACATCATAGCACCGACTTCCTTACCACGCTTAGCAGCCAACATGGTCAAAGGATAGGTGATGAAACCTAGTGCGATCCCATCGGAGATGCTGTAGGTTAAAGGCATTCCCAGCACAATCAGAAAGGCCGGAGCAGCTACTTCGAATTTTTCCCAATGAATGTTCTTTAGGGATTGGGCCATTAGCACCCCAACGATAATCAAAGCGGGGGCGGTGACTTGATCCGTCACAACTGCCAACAATGGAGAGAAGAACGCGCCAAAGATGAAGAGTATCCCAGTGACGATG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21547-21152 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQPA01000068.1 Levilactobacillus brevis strain WIKIM12 Contig068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21546 29 93.1 32 .............G..............C CATTGAATGCGGAATGACGGCTTTTTTATGAA 21485 29 100.0 32 ............................. GGACAGTACCAAGATATTCCACAAACAACTGT 21424 29 100.0 32 ............................. CTGCTGTAGCCTTATAGCCCAACAGATTTTTC 21363 29 96.6 32 ........T.................... AGATGGCCTTTTTCGGCTTAGCTGCCTTAGTG 21302 29 96.6 32 .............G............... ATTAGTTGGTCGAATAGAAAAAAGCTAGGTAT 21241 29 96.6 32 .............G............... GGCTGAAAACGAGCTTGTAGCATTTGAACCAA 21180 29 82.8 0 ............T....A......G..TC | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.1 32 GTATTCCCCACACATGTGGGGGTGATCCT # Left flank : CGTATCCGGCTGTATTCCATGATAATGAAGTTGGCGGGTATACCGTAACTTTCCCCGATATTGAAGACGCTACAACCAGCGGCCAAACCCTAGGCGAAAGTCTGGTCAATGCGGCAATCGTTCTCGGTCAGACACTCCATGATCAGCCAACTGTATTACCATCTGCAACGACTATTACTGAATTAATGCATCAATACCCCATGGCATTTATTCAGTTTGTCGCGGTGGATTTAAACCAAGTCATTGCACGAGCAGTACCGACTGATCAAGTGGACCTACAATTGATTCAGTAACTGATGAAATAAAGCGTTGTGAGCTGGTTCCGATTATGGGGACTGGCTTTTTATTAGGTGTGAGAGTGAGTTGTCGGGTGGTGTGCCAGATTGCCGTTGCCACGTTTCTGCGGTATGCTATAAAATATAAATGAGTCTCACAACGAAACTCATAAAAAATGGCGGTTTTGAAATTTTGGAATGCCGGTTTGGCGGTGTTTCTTTAGT # Right flank : AATACTGGGGATGGCTCTAACACCGGGGGCAACACTGATACCGGTAATGGTTCAAATACCACTGGTGATGACAACAGTTCAAGCATCTCAGTATCAATCAGTTCAAACGATTCTGATGAACAGATCAAGCAAGCTGTTGCAAGTCTTAAAAAGATTGCCGATCGTTACAGCATTAGCACTACCGCTTTAGATAACGTGGTTGCTAAGGCATCAGATCCGATGTCAGCAACTGACAAGACAGAAATTGTTGCTGCATTCAGTAACGTGGTCTCAAAGATTAAAGATATTCAGAATTCCGATCAAAATACTGTCGATCAGAATACTGGTGACAATGCTTCAAATCCTAATCACGCCAATACTGGCTACACAACTAATTTGAGTGAAACGGCAGCGGCTAATAAGCGTCTTTCCGAGAATAAGCTAGTCCCAGTTAAGCCAGATTACGACACTACGCCAATTAACCCACACGATAAGAAGTATCTGATTGATACAACTGCTCT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACATGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACACGTGTGGGGGTGATCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //