Array 1 40909-42100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHES010000017.1 Anoxybacillus tengchongensis strain DSM 23211 Ga0415328_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 40909 30 100.0 37 .............................. ATATGATTCAATTGTTTACGGGGTTTGTTGGATCCGG 40976 30 100.0 39 .............................. TGTCATAGTCTTCGATGTTTAATTCGTTGACTATATAGT 41045 30 100.0 39 .............................. ATTTTTCATCGGCAATTTCTACGCTAGGAGGATTGTTCT 41114 30 100.0 39 .............................. GGTAGTGACTATTATAGACCGTGGAGTGTAGATAAAACA 41183 30 100.0 40 .............................. CGATGACATCACACATCCATTGACAGTAGCAAATCAGTTC 41253 30 100.0 39 .............................. AATCCCGTCGGTTTATGAACAAAATTAGGCAATTCACAA 41322 30 100.0 37 .............................. CTGTTCCTGTATCTAGGGCATATAACCAGTCGGGTTT 41389 30 100.0 42 .............................. TTTTCCCAATTGTGCCAATAAACAGGAAAAGAATTCTCGCAG 41461 30 100.0 38 .............................. ATATTTCAGTTTTTTTTCCTGAGAAAGTGTCTTAAAAA 41529 30 100.0 38 .............................. CCGCATGATGTGTATGTGAGGGGGGCGTTCTGATGAAG 41597 30 100.0 37 .............................. CTTTTTTCCGCCCGTTGCAATATGGGCACGTGGCTAA 41664 30 100.0 38 .............................. GCGATGAGGATTTTAGACAACGTATGAAAGAGGAAAGT 41732 30 100.0 37 .............................. TAGACTCAAAAGAGGGGGAGAGAAGACCTCTCCCTAA 41799 30 100.0 36 .............................. CTCGATATTAATTTGTTTCAAAGCGATATTAGCTAC 41865 30 100.0 38 .............................. CAATTTTAGATTGATAATTAAAACTTGTTCTCTTTTTT 41933 30 100.0 41 .............................. ACGAGACCTTTCGTAGCCCCGTCTCCAAAGACAAGGTCGAA 42004 30 100.0 37 .............................. AACATATCGTAGATAATGCCTTCCGCCAGCACCCATA 42071 30 80.0 0 .................T..CG....GC.T | ========== ====== ====== ====== ============================== ========================================== ================== 18 30 98.9 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TCCAAACGCCATTGACGAAGCGAAGCGACCACTTGTGCTCGGAGCGGTGTTTATTCTCATGCTTTCCTCTATTTTTTTCTCCCACCGTTCACACATATATGCACGAAAAATAGAAGAAGAAGCATAAACCCCATTTTCGAACGAAACAAAAACGTGTAAAATAAAAGAAAATGGGCAAAGGGGGAATGTATGATGATGTGGATGATTACAGGTCTAGTCATTACAGCCGTCATCGGTTTTGTTATTATCGCGGAAGTGAATGCCGAAGCATAAAACAGTCTCTAAACAGGAGACTGTTTTTAATACAATTCACTTGTGATAAAATTCACAACTGTCGTCGACCTCCAATCTTGCAAAAACCCCGGGGGATCGACGACACTTCATTTTTTGTGAATTTTTTAGCTGTATCAACGGACATAGACTATTGACTGAATTTTCAAATGTATGTATAATGATGTTGTATAGCTTTTCCATGTGTTGATATATCAACACTTTTTTGG # Right flank : TGGGTTGTATTGAAAAGTAGGGATGTTCATACCCTGCTTTTATTTTTTTAATTACAAATTTCAGAAAAGTATTGCGTAAAAAATAGTTCGTTTGTATCATCAGTAATATGAGGATATTTTTTGAAAAGGTGGATACAGGATGAAATTACTAACATTTCTCGGTGCGAATGACTATCGTGAAACAACGTATCGTTTTCGGGAGCGTGTGCATACGGCAAAGTTTTTTCTATCTGTCCTTATTCAAGAACTGCAACCAGATGAAATATACGTATTTATGACAGATGGGGCGCGAGAAAAAAACGAAGCACCGTTGTTTGACGAATTAAAACAATACGGTGTAGATGAAAAGAAAGTGCATGCTGTGCGTATTCCCGATGGGCAAACAGAAGAAGATTTGTGGAATATTTTTTCCATTCTCGCTGATCAAGTGCATGAAAATGACTCTATCGTTCTTGATATTACGCACGGCTTTCGGACATTGCCGCTCGTTGGAACAATTA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 12560-14219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHES010000001.1 Anoxybacillus tengchongensis strain DSM 23211 Ga0415328_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 12560 30 100.0 39 .............................. ATTGTATAGCGCTGATCTGGCCGTTTTCTGTATAGAAGA 12629 30 100.0 39 .............................. TCGGGTCAATAAAGAAAACTATTTTGAAGTTGAAAACGC 12698 30 100.0 40 .............................. TTTCAGTATCGCTGAATTAAGCCGTTTTCACTTACTCCCA 12768 30 100.0 39 .............................. ATCGTATTAAACGCGGAGATACATGTACGATTGAAGCAG 12837 30 100.0 37 .............................. TCAATCTTTTTCAAGCGTTCAAAATAAATCGGCATCG 12904 30 100.0 36 .............................. TGATACAACAAGATTGCTGAAAAAAATGTCGAAATG 12970 30 100.0 37 .............................. ACCCACGGCGCAGGACAATTTTTTCTGGTGATGTCAT 13037 30 100.0 35 .............................. GGACTTGACTTAGACACGTTGATTCTAATCATTCT 13102 30 100.0 38 .............................. TGTTCTGCGACGACTAAAAGGCCCTTCTGCCATCCGTA 13170 30 100.0 39 .............................. GCGAATACAATCGTGTATTCGCCGTCCGCAACCCATTTC 13239 30 100.0 40 .............................. GATGCTTGCAATCGGAAGAGGAGGTAGCTAGGTGGATAGA 13309 30 100.0 36 .............................. ATTTCGATACAACTTTTTGAAGCGTGAAAAATCCTT 13375 30 100.0 37 .............................. CTAAAAATTTCATTTTTACTTCCTCCTTTGTTTGTAA 13442 30 100.0 39 .............................. AAGTTATCTTCTGTTGTTTTTTCTATTTGTACTTCAACC 13511 30 100.0 39 .............................. ACGACGAAAGATGGCTTCTCTTTCGTCGACTTCTCCTGC 13580 30 100.0 39 .............................. ATGAAGATTTTTCAATAATTGGAATGAGAAATCTCAATG 13649 30 100.0 39 .............................. TATGAATGGGTGTGGATAGATGACGAAGCAGGCCAAAGC 13718 30 100.0 38 .............................. TCGCTAATTTTCCGCTCAATTTTTCTGAAGGTATGGTT 13786 30 100.0 37 .............................. GTGCAGAGGCGTACAAGCATTGGGCTGTCCTGTTGGA 13853 30 100.0 39 .............................. TCCACTCCGTCACGATTTGTAAGAACGCTTGTGATTTTT 13922 30 100.0 36 .............................. AAGGCAATGGCTGATATATTTGATAGCATTTCGGAT 13988 30 100.0 38 .............................. CGCCCATCTTCTAAATTTTTCAATCCGCTTTTCCATTC 14056 30 100.0 39 .............................. CCATACCAAACAACATTCCACGCAGCATACCCGATTTCC 14125 30 100.0 36 .............................. GCAGAAATGCAATATTCGCTCGCACGAGATGAAGAA 14191 29 83.3 0 A................A...-...A...A | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 99.3 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : ATGCTATGGATGACATTTATCCTTTGCTTGTTCAGCTGTTTCCAATAAAAAAGATAAAGGATAATCAAGTCGATGAACTTGCTCGTTATTTAATAATTAACTACCATTTCGAAGTTCATATTATTCATCGTGATCGTGTAAGAACATGCTACGAAATTCGTTTTAGGGATCAGTTCATTTGGGTAAATATAGAAAACAAACATGAAAATTCATGCACATATGTACAAGGTGATTTGGATTTCTTTGACGAAGTGTACCATATTTATATTGACTTTGAACGTATCATAAGACAAACACAGTAAAATCCACTTATTGTGAATTTCTTCACAACTGTCGTCGACCCCCAATCGTGCAAAAACCCCGGGGGATCGACGACAGTTTGTATGTTGCAATTTTTTCAGTTGTATCAACGGATATAGACTATTGACTGAATTTTCGAATGTATGTATAATATCAATGTATAGCTTTTCCATGTGTTGATTTATCAACATTTTTTTGGG # Right flank : AAGCTGTTCCGAAGTGTTGTTCGGAACAGCTTTTATGTTGTTTATACGTTCCAGAGACCTTTCTTTTGTTGGCGTGCTTTTCGTTCAGCCTCAAGAAAACGTTGTTGATACTTTACATTTGGTTGAATCGTCATCACACGTGCGTATCCGTCTTTGACGAGCGTTTCGTTGTAAAGCTCTTTTCCAATCCAAACGTATGCTAGGAATCTGCCGTATTTATCTTTTATTCCTACATCGAACTCAAGTGTAACTGTTTGATTAGTCAATCGTTTTTTTGTGTAATTAGATGCTTCTTTTCCATATTTCTCGACTGGTTTTTGAGGATGGACGGTTTCTGGTGTATTAACCCCAATGAAACGAACTCGTGACGTTGCGCCGTTAGAGAAGCGTACATCGATCGTGTCGCCATCTACTACACGAATGACTTTTACGATATGTTTTGAGTTCACACGAATAGTAGGGACACTCGTGGCTTTACTTTTTTGGCGAATAATGTTGCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 24112-24889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHES010000001.1 Anoxybacillus tengchongensis strain DSM 23211 Ga0415328_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 24112 30 100.0 38 .............................. TAAGCTGGTTCAATATCTTGACGGCGAACCTTATAATA 24180 30 100.0 38 .............................. ATGATATGATAGACAGCATTCATTTCTTTTTTTACAAT 24248 30 100.0 36 .............................. AAATCAGTAATACCGCTATTACCAAAATAAAAGGCT 24314 30 100.0 39 .............................. GAGTTTTCGTATCCCGACCCGAACGCAACCGAATCGCAA 24383 30 100.0 37 .............................. TCCTCAATCCACGTCTTTCCATCCCAAATAAGCCACT 24450 30 100.0 37 .............................. TCTGTTCGGTGGAAAAGATGAATCCTCGCAAGACCTC 24517 30 100.0 38 .............................. TTAGGAGGAAAAGATAATGGCACAAATTAGCTTCGAGG 24585 30 100.0 39 .............................. CAGCTTGAAAGAAGGTGTGAAATGGTGGTAGATGCGTTT 24654 30 100.0 39 .............................. TTTGCAAATACATAACCAATCTTTGTTTTACCAATGTTT 24723 30 100.0 39 .............................. GAACCATTGAAACTCGACGGGAACGAGCGAGCGATGATT 24792 30 100.0 38 .............................. TGGTTTTTCAACATATTGCTTACTTGCAAATCCTCTAC 24860 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 12 30 100.0 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : ACGGTGGATGGGAAGAAAAAAACACAATTTTTTGACCCGAACGATGAAGTGTTTCCCCATTTAATGGAACGGAATTTTCATAACAAATATGAAGCATACTATGGGGTTCCACCGAGCGATCGGTTACTCATCGAACCTGTCGATGTTCGAAAAAACGATCGGATCGTAACGAGCTTTAAAGGCTTTTACATTACAGCGTGGAAAGGGCGGTATAAGCTTATTTCTTCTCCAGAAAATTTAACGTTTTTGTATCGTGTAGGTATCGGCGGACGAAACTCACAAGGATTCGGCATGTTTCGTATTGCAAATAGAAAGTGAAGTATTTCACAACTGTCGTCGACCTCCAATCTTGCAAAAACCTCGGGGGATCGACGACAGTTTGTATTTTGCCACTCTTTCAGTTGTATCAACGGATATAGGCTATTGACTGAATTTTCGGATGTATGTATAATAACATTGTATAGCTTTTCCAAGTGTTGATTTATCAATACTTTTTTGGG # Right flank : CAAGTTTTCAAGGAGCGTTTCTGTTAGAAAGGTTTTCAAAACATTTCTAGCGGGAGGTGAAAGTCTTGCCCGTGCATAAAGCGTATAAGTTTCGCATGTACCCGAACAAAAAACAAGAGGTGCTAATTAATAAAACGTTCGGATGCTCACGTTTTGTGTTTAACCATTTTCTCGTCAGATGGAACGACACATACAAAAAAACAGGGAAAGGACTGTCTTATCAGGCGTGTTCTTCGCAATTGACCAAGTTGAAAAAAGAATACACTTGGCTCAAAGAAGTGGACAGCATCGCACTTCAAACCTCGCTGAAACATTTGTCGGATGCATTCACACGATTTTTCCAAAAACAAAACGACAAACCTCGTTTTAAGTCAAAGAAGAACAAGGTGCAATCGTATACAACGAAATACACGAAAGGAAATATAGCGATTGTAGGTAACAAAATCAAGCTTCCGAAACTAGGATTCGTTCGTTTTGCCAAAAGTCGTGAGGTAGAAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 33366-33926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHES010000009.1 Anoxybacillus tengchongensis strain DSM 23211 Ga0415328_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 33366 30 100.0 37 .............................. TTCATGCAGAGATTATGAAGGCGATCGGCAATGTCAA 33433 30 100.0 36 .............................. CGGGCAATTTCGTTTGATACCACTTGTACGCATAGA 33499 30 100.0 36 .............................. ACTCTTCAGAGTGACTGCTTTTAAAGTTTTGTTTAA 33565 30 100.0 37 .............................. ATTGAAATTCAATCATATGAACTCGCTCTTATTTCTT 33632 30 100.0 35 .............................. TGGTACAAGGGGTATAAACCGAATGAGGAAATGAA 33697 30 100.0 37 .............................. GTTGCTCATCTGTCGCCAAGTGCCATCTCATCGCACA 33764 30 100.0 36 .............................. TCGTCTGCAAGTTCCAAAAGCAAAATGCGTAATTCC 33830 30 100.0 35 .............................. TCATCTCGGAAATTGTGTTCCGCGATGACGAGCAA 33895 30 76.7 0 ..............G..G.......CGGCG | T,T [33915,33918] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.4 36 GTTTGTATCGTACCTATAAGGAATTGAAAC # Left flank : TGTTGTTTGGCTTTTTTGAAACATATGTAAAACGATCAGATGAAGAAGAACGAAGACTGCGAAGCGAGGTGAATGAAATGGAGACGAAAGAAAAAGAACAAGTGTTGGAACTCATGATTTCGTATGAACAAAAGGCGTTGGAAAAAGGAAGGGAAGAAGGAATGAAACAAGGGATCAAACAAGGGATGATACAAGGTATGAAGCATCTCGTACAGACGATGAAAAGAAAAGGAATGAGCGTCAAAGATATCGCGAACGTCACAGACCTTGAGGAAGAAGAAATACAGAAGTTGTTAGAGAAGGAATAAGTAATTTGTGTATTATTTCACAACTGTCGTCGACCTCCAATCTTGCAAAAACCCCGGGGGATCGACGACAGTTTGCTTTTTGCAAGTTTTTTAGACGTATCAACGCATGGAGACTATTGACTGAATTTTCGGATGTATGTATAATGTTGTTATATAGCTTTTCCACACATTGATTTATCAACACTTTTTGGG # Right flank : GCTGGGTATGTCGGTTTTTAGATGTTCAAGAGGAGAAAATGAAGAAAAAGTTCACGAAAGATGTGAGCTTTTTCTTTTTTATTCTTCATGGTAGTTGGAAAATGTATAGAAAAATCAAACATATTTGATACAATAAAAAAATAACGATCGTATAGGAGGGAAGATGATGTACATCTATTTATTTGAAAACGATCAGCCCGTCGTTTGTTTCTAAGACGGAGCAGGGGTTCGTTCCGTCTTGTAGAGAATGAGAAAAAGACGGGGGAAAGAAGATGAGACAAACATTTTTCGGTTCGTTGTATTTATCGCTTGCGGCGAGCATTTGGGGTGGCATGTATGTTGTGAGTAAATATGTGCTCGATTATGTTCCGCCATTGACGCTTGTATGGCTTCGTTATGCGATTGCTTTTTTTGTGTTATGGGCAATTTTACGAGTGCAACGCATTCCGGCGCCAAAAGAAAAAGAAGATTGGAAGCATATCATATCCATTGGAATCGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 59445-60556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHES010000009.1 Anoxybacillus tengchongensis strain DSM 23211 Ga0415328_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 59445 30 100.0 38 .............................. ACGTGGAACAATGGGACAAAGGCATGGGAGCGTGCTGA 59513 30 100.0 38 .............................. ACGACGAAAGATGGTTTCGTCTTCGTCTGCTGGATTGT 59581 30 100.0 37 .............................. AATATTTTCCACATTCTCAGTATGTGTATCCTACTAA 59648 30 100.0 39 .............................. CGATGTTATACCTGTTCTTTTGAGTGCTTCAGAAGCTGT 59717 30 100.0 39 .............................. AAATTTCCAGTTTTCAGCTTCTTGAACGCGGGTTGTATG 59786 30 100.0 36 .............................. GTCGATGTAAACATGCCATTGCGGAAACAATTCAAC 59852 30 100.0 38 .............................. AAACAATGCCCTAATTCACGGTCTGTCATGTCTGTATA 59920 30 100.0 40 .............................. CTCGTGAAAATCGTTGATATATCAACAGTTGGACACCGTG 59990 30 100.0 35 .............................. ATCACCAACATTTGATTTCTCTTTTTCATGCTAAT 60055 30 100.0 37 .............................. TCGATGTGCCGAAAAGAGAACTAGGTGCGGAGGTAGT 60122 30 100.0 37 .............................. GATTCATGAGAGCCACCTCCTGCAACTAGTGTTTTTA 60189 30 100.0 38 .............................. TAAAAACTTAATAACTAATCTGTTTTTAACCAGACACT 60257 30 100.0 40 .............................. CTACTTGCGTATATCGTGTAATGCGGTCCAGCCGATTTGA 60327 30 100.0 37 .............................. GATTCATGAGAGCCACCTCCTGCAACTAGTGTTTTTA 60394 30 100.0 36 .............................. CGGATCTGCCCAGACATCGTATTCGTGCCAACGCCC 60460 30 96.7 38 A............................. GGGTCGCTCCAGACCTCATACTCATGCCAACGTCCATA 60528 29 83.3 0 .........-.......A......AA...A | ========== ====== ====== ====== ============================== ======================================== ================== 17 30 98.8 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TGAAAAAGCAATTTTTACGCATGCTTGTCCGAATGGAATTAGACGAAGCGAAACAACGGTTGTTGTTTGGCTTTTTTGAAACATATGTAAAACTATCAGATGAAGAAGAACGAAGACTGCGAAGCGAGGTGAATGAAATGGAGACGAAAGAAAAAGAACAAGTGTTGGAACTCATGATTTCGTATGAACGACAAGGCATGAAGCATCTTATACAAACGATGGCGAAAAAAGGGATGAGTGTAGAAGATATTGCACGCATGACAGACCTTGCGAAAGAAGAAGTACGGGAGCTGTTAGAAAAGGAATAAGTAATTTGTGTATTATTTCACAACTGTCGTCGACCTCCAATCTTGCAAAAACTCCGGGGGATCGACGACAAGTTGCTTTTTGCAAGTTTTTTAGACGGATCAAGGCATAAAGATTATTGACTGAATTTTCGGATGTATGTATAATGATGTTGTATACCTTTTCCATACATTGATTTATCAATACTTTTTGGG # Right flank : AAAGTCAGCGTGTTCGGCGCTGACTTTTTTATCGTATGAAAACAACTAAAACCGTTTTGCGATTTCTTTGGCGCGTTCGATGGCTTGTTGTTTAATGGCTTCTGCTTCGTTTGGGAAAGCGTTCATGCCTTCAACGGCAATCGTTTCGACATCTGTGATGCCGATGAAAGAGAGGACAGCGCGTAAATAACGGTCGCCAAATTCGAGTTCTTTTGCTGGGCCTTCGGAGTAAATGCCGCCGCGTGCTTGAATGTGAATTGCTTTTTTCCCTTGTAATAACCCGACAGAGCCTTCTTCTGTATATTTGAACGTTTTTCCTGCAAGACAAAGGGTGTCCATGTATGCTTTCAGTTTTGGTGGGAAGCTAAAGTTCCACATCGGTGTGACGAATACATATTTGTCAGCTTCTATAAATTGCTCGCACAACTCGTTTATGCGTGCAATTTTTGTTTGTTCGTCTTTGCTTAGTTGATCAAATGCTTGTCCTTGTTGCAGTTTGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //