Array 1 1-293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBYL010000038.1 Methanobacterium subterraneum isolate HO_2020 metStef_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1 31 100.0 36 ............................... CCAAACCGGCTTTTTGTAGGATATATCGGTGTCCTG 68 31 100.0 36 ............................... GACAACACCGGCATTCCTTCAATTTACTTTTACTTC 135 31 100.0 35 ............................... CTTATTTGTTTTAATATAACACCCAATGAACATAA 201 31 93.5 32 .......................A......A TGTCCTACTGTTGAAAAATAAGTCATTAAAAA 264 30 71.0 0 .....-....TT...T......T..T.T.GC | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 92.9 35 GCTTTAAAATAGACTCAATAGTCTGGAAATT # Left flank : | # Right flank : CTTCTGATTTCATTAAATTGCTGGATGATTTTTATATGATTATTTTAGTAATATTACATTCTTCGCTGTTTAGTACGATTAAACTCCATTCTATTTAATCCAAGGAATCATAATAAAATACAAATACTTGAATAAATAATATTAAATGGGTGGTTTCATTGTTTCAATCAGAAATTTCAGAAGATTTTATGACAGTTATACCCTTGGAAATTAGGGAAAAATTCAATTTACAACCTGGAAATATCATGAAATGGACAATAGTAGATAATGCAGTTAAAGTTTCTTTTCATAGAGTAATATATTTAAGTGATATGATTGCCAGTAAAAACAAAGGTGATGATTAAATCTTAATCTAGGTTAAAACATACCCGATGATTTGATTTTTCAATGAAAAGCAGGAAGAGAGCGGACTACAGTTATTTTTACGGTAACTAAGTGGTAGTAGACGTCCTAACTCTGCAATTTTATTATTATCTTATGTAGAAACTCCAGTTAGGGCA # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAAAATAGACTCAATAGTCTGGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1-1502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBYL010000007.1 Methanobacterium subterraneum isolate HO_2020 metStef_contig_140, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1 30 100.0 37 .............................. CTGAATTTATCACGGTGAGACACCGAAAAAATGGGAC 68 30 100.0 38 .............................. TCACAATAGAGCATATAAAAGGGTGACAATTGTCACAG 136 30 100.0 36 .............................. CAGACAGCCCCTACCACTGGTTCTACACTGATTACT 202 30 100.0 36 .............................. GTACGATCGCAGATCAACCAAGCGTTCAAATTCTTT 268 30 100.0 37 .............................. TAAGAAGGAATGCAGGGAACTGCATTTACTGTGAATA 335 30 100.0 38 .............................. TCCGTACAGTTGAACTTGGACCCCGTACCGCATCACCA 403 30 100.0 36 .............................. CCTTAATCCATACTTAGTTATTGAAGCAGTGTTCTG 469 30 100.0 39 .............................. TTGTATGGACTTATGAAAGTGTTACCAGTTATTTCACTG 538 30 100.0 35 .............................. TATAATATAGGAAGTTACTGGTGTTCTTCTTATGC 603 30 100.0 36 .............................. CCCAGTAACTGAAGGAATTAATTTAATATTTTGTGT 669 30 100.0 37 .............................. TTAACCAGAAAGTGAACGGACCAGACTTATCAGGGGT 736 30 100.0 37 .............................. CTTTCCAACCCTTCCACTACTTTAATCTGACTCTTGT 803 30 100.0 37 .............................. CCAAATACAATGTCAACAACCCCCTGTACTCCTTTCT 870 30 100.0 36 .............................. GAAATTATCCCGTTCATCCCTACTCAATGCTTGCCA 936 30 100.0 37 .............................. TAGTTACCTTCAACTCCTGTTCTCCATTGTCCTTTAA 1003 30 100.0 36 .............................. GCATTTTCTGCAACACTTGGTTCGGGTTCTGGAGTG 1069 30 100.0 38 .............................. TCAAGGGTGGCTATGAATTGTGTGGCCCTAGCATCACA 1137 30 100.0 37 .............................. ACATTTTTATTGTTATATTAGCTTACGCGCTATTTCA 1204 30 100.0 38 .............................. CTACAAAAAACTGACTATATTCAATTAGCAGGGGAGAT 1272 30 100.0 37 .............................. CCGCTAATCATGTTAACCCGTTCGATACATGTGACAA 1339 30 100.0 37 .............................. TTCCCTTAATTTGCTTTTACTCCCAAACCATTCCTGA 1406 30 100.0 37 .............................. TCTGCATAGGTCATGGTATGTTCAACCCCTATCAAAA 1473 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 100.0 37 ATTTCCAGACTATTGAGTCTATTTTAAAAC # Left flank : | # Right flank : CCGCGTCGATTTTTGGGTTATTTTACCAATAAATGGTGCAAAGTTCTCCAATAATAGGGGTGTATTTGTCCACCATCAGTAATGTAGTTTACTTATAAAGGCGGACTAGAGAATCAGTTCGATGGGATTTTTTTCAATCCCAATAACTTCTAACTTGAAATTTTTGCGATCTTTAAGATTATAGATCAAAATAGAATCTTTATCTTCATTTGCAATGTCTTTGAGACCAGATTTCAATTTTTTGAATTGAGATATTGAGATTTCACCCTCAAAAACTGAATTCTGCCTCCAGTGAAGGTACATCTTCAGGAATTTATTTACTTTATTCACCCTATTAACATCTACATCATAAACTATTAACAAGTACACTTACCACCACATCCTGAAGCTCCTGTACTCTTTATCGCCGAGCACATGTTTTATTAATTTGTAACACTCCAATCTCATGAGGTATTTATAGGAAACTTTTCGTTTAATCTCAGGATGCTTAATAGTTGTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCAGACTATTGAGTCTATTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //