Array 1 11387-12573 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQP01000046.1 Ligilactobacillus agilis strain UMNLA7 agilis8I4S3LR1contig28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 11387 28 100.0 33 ............................ TAGGGGTATCGACTTTTTTATCTATAGGGGGTG 11448 28 100.0 33 ............................ TTATTCCGGCTGAAGACCTTTTACTTGATGAAC 11509 28 100.0 32 ............................ ACAGATAAAGAAGGCGAAAATGAAAACTTTGA 11569 28 100.0 33 ............................ TTGAGGCGGTGACAATTGCCTTACTACGTAAAA 11630 28 100.0 33 ............................ TTGGTCAAGGTAAATTAGACGGCAAACTGTTTG 11691 28 96.4 33 T........................... TGATAAGTCAGAAGAAGTTCTTAAAGTAATTAA 11752 28 100.0 33 ............................ TTAGTAATATATTGGCAATCGGTCCGGGGATAG 11813 28 100.0 33 ............................ AAATCAAAGACACGAAGTATATTGAAGATCCGG 11874 28 100.0 33 ............................ TTGACCGGGCTAATGAAACTTCACAGAAAACAA 11935 28 100.0 33 ............................ TTGTAATCCATTGGATCAGGATCCTCATCAGCT 11996 28 100.0 33 ............................ CACATTCCAATTCTGTTTTTGAAAGGCTGTCGG 12057 28 100.0 33 ............................ TAGTTCTTCAAGCAACTTCACACCGTTGTTTCC 12118 28 100.0 33 ............................ TATAGTTATGAACTTCTTCCGCCTGTTCTGGTT 12179 28 100.0 33 ............................ TAGTGGTGAGAGGACTCTTACTACAAGTGATTG 12240 28 100.0 33 ............................ TCGTACAAGTCATCGTTATGCTGACCGAACCTA 12301 28 100.0 33 ............................ TAATTTGTTGAGCATTAGATACTTCAGTTACCG 12362 28 100.0 34 ............................ TAATTTTTTGATTGTTTCTTAATGATCTTGGTTA 12424 28 89.3 33 ........T.................TA ACTTCACTTTCCTAGAGTCGAAGAAGAGCCATA 12485 28 100.0 33 ............................ CATATGTGCAAGTGTTTGTAAACACTTTTTACT 12546 28 85.7 0 ..............G.......C...AT | ========== ====== ====== ====== ============================ ================================== ================== 20 28 98.6 33 CTTCTCCCCACACTAGTGGGGGTAATCC # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTAAAGAGTATAAAACTTTTAATCGGTATATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAAGAAAATCAATTGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTGCAAGCAAGTAGGCTTAGACTTACCTGCTAATCGAGTGGTTGACTTGGCAATGCTCGTAAAAAAGGATAATGAATTTTTAGATAACTATCGCTTTGCAACGGTTTTAAAAGAATATGAGATTGATAATACTCAGCCTCATAATTCTCTGTCCGATTCTATGGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGGTTGCTTACGGATTTAAAAATACCGGTTTATCAACGTTTTTTTAGT # Right flank : TGAATTAAGCCAATAATTCATTGGTAAACATACCATAATGAAATGTATGTAATTATTTTCCTAATTCCTTATACTACTAATATGGACATAGTATATGTTGAGTCTAAGCCGTTACCAATACATAAGTTCTATTTCTAGGACCAAAAACAGAACTAGCAAATGGAGACTAACCACTTGCATCGTGTGTGATGGTTATAGCGAAAAATACCCTCAAATAACCTATATTTGGCTTATTGTTTGATTCCTAAACATTTGTTAAAATGTAGGCAACAAGGGAAGTTGATGGAAATAATATTAGTAGCTAAATTGAGTTGAAGGATAATGGTTAAAGATAGTTAACCACTTTTAGTAACGAGCTGTTAGCGCAAGTTTTAGCATTTTTTAAAAGCAGTTAGGAGGAAAAATAGATGGATAGTGTAAAGTATCAACCAAGCCGGCATATTATGGATTTTCATTTGGCAGGTTTTGCTTATTGTGATGGGTTAGATGTAATTGAGGAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTAGTGGGGGTAATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.50,-11.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 1686-1844 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQP01000116.1 Ligilactobacillus agilis strain UMNLA7 agilis8I4S3LR1contig98, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1686 29 100.0 36 ............................. ATGTTGAAGATGAGTAGGTTGCGTAACGGGTCTTTC 1751 29 100.0 36 ............................. TAAACCGTTTCAGAGTTAAGTTTGACCTCCTGTAAG 1816 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 36 GATCTATTTAACTTAAGAGGAATGTAAAG # Left flank : GGAATTTGAGGGATAAAAATTTATGAAACTTATCCGGAATTATTTGTATAATGCAGGATATCAGATGTTAGCACTAATAATTCCATTTATTACAGCTCCATATATTAGCCGGACTTTAAAACCCCATGGAGTGGGGATTTATGCCGATACAAATGCTTGGATTCAATGGTTTGTACTGAATGCTTTTAGGATAAGCGTCATCATGCTTCTTAGTTTACTGAACTTTTTCTCGTAAGAAATTTTAGCTGCAAAATTGTTTGCATATGGAGTGTTGTGGTGAAGTACATTTTTTACTAGTTACATTTTGTTATAGAGTGCTGGCATCTGTCGACCTAAGATAAGGTGAAATAGTACTGGTATCGACAGACTATAAAAAGGTTGATATTATAGGCCTTGAAAGGATTTAGGGAAAAAAGTAATATATAACTGAGGGTGGAATTTGGTGATAGACAGAATGTATGTGAAAACTAGTTGGTGGTACAGGGTTTTGGTAGTGTAGA # Right flank : GATATTAGGTGCCTCTACTTGAGAATGCTGCTATAAATATAACCAGCCTATGATTGAATGCTCTCGTTTCAATCATAGGCTGGTTTAGTTAGTTATCGTTGTGGTAGTAATTAATCAATTCTTCATAGGTGTCGAGGGGCTCGAAATTGAGGGTCCACTCAACTAAGGGCATATCCTCGGGGGTCAGCTTATAGGCAATTTCATTTGGATCTAGGTAGACGGCTTCGGGGTCAGGTAAAGCTTCTTGCATCACTTGGCCAAAATATTCACTATTCTCGTCTGTCACCTTAACTTCCTTGCAGCGGTGCTTAGTAATGAAGCACAGTTCAGGCATTTTTAATAAGTCCAAGGTGAAATCCTGGTGATTCAAGTGGATATGTGCTAATAGCTGGGTGAAGCGGTCGTGCGTTGAATTTAGCTGGTAATCAAATGAGTAGTTAAGGGCGGGAAGCAGGTTTTCATCTGCTGGGTCCAATCCGACTCTATCAGCCAAATAATAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTAACTTAAGAGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 65652-65026 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQP01000070.1 Ligilactobacillus agilis strain UMNLA7 agilis8I4S3LR1contig55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 65651 30 100.0 35 .............................. TATTATCTTCATTCTCTGATTCTAAGTGAACAATT 65586 30 100.0 36 .............................. ATTTTTGACCCCGTGAATCCATCCCAACCACCATTT 65520 30 100.0 37 .............................. TGCGCCAACACCCGTTGTTAGCTTCAAAAAATTATAA 65453 30 100.0 36 .............................. ATAGCTTTGAAGAACTGTGTTAGTTTCCATTGGAAC 65387 30 100.0 38 .............................. GAACCTTGCTTGATGGATTAACATTACTTGACGAAAAA 65319 30 100.0 35 .............................. CATGCACAGATTATGTATATTGCTAATGATGTATT 65254 30 100.0 38 .............................. GAGAATGCCCGTTTACTCTTCAAATCTTTAAAGTCAAG 65186 30 100.0 36 .............................. CCGGCTTGCTTTTGTTTGAATTTCATCTCACTATAA 65120 30 100.0 35 .............................. GTTGCTGAAATTACTTTAAATGCAATGAATTTTGC 65055 30 86.7 0 .................A......A...TG | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.7 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : GTAATGTAATGCTTTTTTAGGAAAAAGTATCCTAACAATTGGTGAGTATCGTATATTTTATATACGGTATTTTTTTATACTCTCTTTTTGTTTTTAAAAATATGCAAGTGAGATAGGTATAACTTGTAATGTTAAAAAAACTTCAAGTATACATCTGTCGACCGTAGATAGAGCAAAATGAAGGGGACATCGACAGATGATGAAAAAGTTGAAATCACTGGGCTTGAAAGAGTTCACAGAAAAAAGTATTATGTAGATATGGGGACAAAAGTAGTGATAGACAGAATGCATGTGGAAACTAGTTGATAGTACAGAGATTTTAAAGGGTAG # Right flank : ATTGAAGAAGTTGAGTATTATATATGGAGAATTAAAAAAAGACATGGGTAGTTGATGGTTATACATGGCTACATTGTCCTGTATGTGGTGAAGAGGTTATGGATTATGATATTTGTGATAATTGTGGATGGCAAAATACAAGAATTATAAATCATGATGGTGGACCTAATCATATGATACTCGAAGAAGTCAAAAAAGCTTATGCTGAAGGACGCAAGATTAATTAATGTCCAGTTATGCAAAGATAGTGTTATTTGGGCGAAGTGTATTATCATTTTGAACTCAGTCTCAGGACTGCTGCCGTAGTTTTTCTAGTGTTGTAATCGAAGTAACAGAATAACAATTATCAAGATAGAATAGGAATATAGTAACATGATGTTTCTACAAGAGTTAGTCAGTTAAATTAGCACTATGATTATAAGCTTAAAAGGAGTATTGGAATTTGATATGTTAGAAGTATCCTTATTTAAACAGAGTTATTTTTATGAAAAGTATAAAAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 29088-27865 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQP01000092.1 Ligilactobacillus agilis strain UMNLA7 agilis8I4S3LR1contig75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 29087 30 100.0 35 .............................. GCTTGTAGGCTAGCCTTTTCTGCGTCTGATAATGT 29022 30 100.0 36 .............................. TGACTTTTTTGCTGATATGTCAAACAGGGAGCAATG 28956 30 100.0 36 .............................. CATTTTTCACGCGCTGATGTGGCATGTGATATTATC 28890 30 100.0 38 .............................. TTGAATGGTTGACCTGGAAACCCCGCACATTTGTTCAG 28822 30 100.0 36 .............................. TTCTTTACGTATGTAAAGTATAATGGGTTATACTTG 28756 30 100.0 35 .............................. TGTAGTAGCCCAATTCTGATACTTTCTTTCTAAGT 28691 30 100.0 37 .............................. AACGATTTTAATAAAATTCAAGAAAACATGGCTCAAA 28624 30 100.0 36 .............................. CATGATTTTGGCTACGCCTGGATATTTAACATAGCC 28558 30 100.0 36 .............................. AAAATTAAGGTGGTCAATTGATAGAATTACAATCGT 28492 30 100.0 35 .............................. GTAAATAGGCAACCTCTCCATTTTGCCGTTTTCTT 28427 30 100.0 39 .............................. CTGTTGCCCCATCGGAAATGGTCTACCGCTCTTAGACTT 28358 30 100.0 37 .............................. TATTTTAACGTCTGACAGCTCAAAAAAGACAAAACGC 28291 30 100.0 37 .............................. CCGGATAACCAGGTGGCTGAGTTAATGCGAGCTGTCG 28224 30 100.0 37 .............................. TTTTTAAAACCTCCTGTTACAATAGAAGGGCAGAATT 28157 30 100.0 35 .............................. AGCCTTTGGCTTTCGTGCGATATAGCTACGATACT 28092 30 100.0 35 .............................. GCAGCAACCAGAGCGCTGACCAACTCTGACTTACC 28027 30 100.0 35 .............................. TACGACATGGATGGGACGTTTGGCATGTACTGGTC 27962 30 100.0 38 .............................. CCATAACCAAACTGACGCGTATGTCTTAAAGCACTCTC 27894 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 100.0 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TACCAACCTTTTAAACTATGGTGGTGATTTTAAGTGTATATAATTTTAGTCTATGATATTGCATTAGATCAAAATGGTGCTAAAGTTTTAAGGCATGTTTTTAAAATTTGTAAAAAATACCTTAGTCATGTTCAAAAATCTGTGTTTGAAGGGGAGCTTACTAAATCACAGTTAAAGAAATTAACGATTGAATTAAGGAAATGGATTAGAGATGATAAAGACTCTGTAATTATTTTTAAAAATCGTAATAAGAAATGGCTAGATAAACAGTTTTTAGGAATGGATATGTCTGATGAAACTTCAAACTTTTTCTAATTATTTATCTGTCGACCATAGATAAAGCAAATTAGGGGTAACATCGACAGATGATTAAAAGCCCGAAATATCAAGGGTTGAAAGAAAATGAAGGAGAAGGTAATATATGACTGTAGGTGTAAATAAGGTGATAGACAGAATATATGGATTAAGTTATTGATAATACAAGGCTTTTAAGGTGTAGT # Right flank : GATGCAAGCTGACGGTGAAAAGTATTCGCTTCGGTACGGGAAGTCACAAAAAGAAATTGCCGATGCTTACTTGGAACTAGTTAAGCGTGATTACTCTGGCAAACAAGCCCTTGGAGCAATGAATACAGAGCTACAAGGTTCGATTGCGTCAGGTGATGACTTTAAAGATGTAGTTGAAGTAGCTTTCCAAACTCTGGAAGGCTTTGGGATGACTGTTGATAAGAACGGTAAGCAGTTATCATCAACTAAAGAAATGACCGTTCAGACTAAAAAAGCAGTTAATACCCTAGCATAATCGGCTAATGTAACATCAACTTCGTTTCAGTCCTTAGGGGTTGGGATGTCCTATGTATCATCAACAGCCCACCAGGCAAAATTCAGTCTAGCGGAAACGGCGAGTGCAATGGGTGTGCTATCGAATGCAGGTTTAGAAGCAGACAAGGCTTTGGTAAAACTGGCCGCTTAGCGAGTAATCGCTTTGAACAAGCATTTTGTTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //