Array 1 213489-211385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZE010000005.1 Salmonella enterica strain 20-REF-1023 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 213488 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 213427 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 213366 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 213305 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 213244 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 213183 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 213122 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 213061 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 213000 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 212939 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 212878 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 212817 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 212756 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 212695 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 212634 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 212573 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 212512 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 212451 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 212390 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 212329 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 212268 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 212207 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 212146 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 212085 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 212024 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 211963 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 211902 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 211841 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 211780 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 211719 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 211658 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 211597 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 211536 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 211475 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 211414 29 100.0 0 ............................. | A [211387] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232018-230160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZE010000005.1 Salmonella enterica strain 20-REF-1023 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232017 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 231956 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 231895 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 231834 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 231773 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 231712 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 231651 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 231590 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 231529 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 231468 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 231407 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 231346 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 231285 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 231224 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 231163 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 231102 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 231041 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 230980 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 230919 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 230858 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 230797 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 230736 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 230675 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 230614 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 230553 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 230492 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 230431 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 230370 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 230309 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 230248 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 230187 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //