Array 1 78914-78615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQV010000004.1 Lactobacillus sp. M0403 NODE_4_length_205817_cov_264.728161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 78913 36 97.2 30 .......G............................ TTTTAGCGCTGTTTGTAAAAACTTCCCTTT 78847 36 100.0 30 .................................... CTAAGTTGCCCTCGCTAAGCTTCCAGGACG 78781 36 100.0 30 .................................... CCATATATCCAATGTACTTTCCATAATCAC 78715 36 100.0 30 .................................... AAACGTGGCGTCATTTACCAGCAGGGAAAA 78649 35 80.6 0 .......................A-.CA..G...CT | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.6 30 GTTTTAGATGGTTGTTAAATCAATGATGGTTAGAAC # Left flank : CAATGGGTGAGTTTTATGCTGGTCAAGTCGTGGCAGAGTATCAAAATGCGCTTGATGTTGATGGTGACCAGAAAATGATTGCCCGTCGGCAGAAAGTCAGTGTTTCAGAATATGAGCAAATTTTTACTCAGACACTTGAACTTCCTCAAGATAACCTTGAATTAGAGAGCGATGAAGAAACCGGTTATTGGTACTTTGCTGGAACTAAAGATCACGTTCGTCAATACAAGCAAAAATAAATTTAGACCCTAAAGTTGGGTCTTTTTTTGTGCACATTTTTATAAAAAGTGAAACCAAAACATTAAGCTAATTAACCTTGTGCTATAATTTAGGTGATTTAATTTTAGTCTAAAAGTTTTTGAACTAAAAATGTAGCTAATTTTTAATTCAAAAGTGTGTTTTTCGCAATTACGAGATAGTTGGGTTGACGGAAAAATACTTTGATAATTGCCGGAACTATTTTTGATAAGACAACATTAAAAAATGATGATAAAAAATCG # Right flank : AATACATAATTAAAAGAAGGCTGAGAATAGAGGCACTAAAAATGATTAGTGGAAAGCAATATAGCCAGCAGGAAGAATTAAAAAAGAATCGAAGGGAAGCCTTTAAACGAGCAGGCATCCTTACTGATGAAGAATTCCATAAGCTAACAACAAGCGAGCGACTTGAATATGTCGAAAAACAAAATGCGTTACATATGCCAGTAACTGTAGAGCGTGACACACCTTATGATGCTAACTTACAAGTGAAAAAATCAGGTAAAGAGAAAAAAGTAGATGTTGACGCTAAGATTAGACATGCACAAACTAAGGGCTTTATTATGAACGCTTTAGGTTTATTAGCCCTAATTGATATAATCCATAATTGGTGGGGACCTTCAAAATAGTTTCATTTTCTAAGAACAAGTGGTTATTACCCAGCCTAAGATAAGACAAAAGTTACTAAACATTTTTAAAATTTACCGAAGTGTATCAGCTTTTGTTAGGATTAATTTATAATTGCT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCAATGATGGTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 90993-91820 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQV010000005.1 Lactobacillus sp. M0403 NODE_5_length_128821_cov_279.005616, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 90993 36 100.0 30 .................................... GCTGATTGTGCTGGGCGTGCAACTAGTTTA 91059 36 100.0 30 .................................... GAGCTGATAGCTAACAGAACCAGAGGCAAG 91125 36 100.0 30 .................................... CAATCGTCTAATAGTCGCTACTGTAAAAAA 91191 36 100.0 30 .................................... CATCAGCACCTAAATTATCTTCGGCTTCAG 91257 36 100.0 30 .................................... TAAAAAAGGTATTTTGATACCGAATATTTT 91323 36 100.0 30 .................................... TTTCAGGAGGGAATATGACAACTAATTTTA 91389 36 100.0 30 .................................... TGGTCAATGATGCTCAATCTGGACCACGTC 91455 36 100.0 30 .................................... CTTCGAAGACTAAGCTAACTAAGGATGCAG 91521 36 100.0 30 .................................... CGTTCAACTTACCCGTTTGTCGTTCGGCTC 91587 36 100.0 30 .................................... ATTCGCGTGATGAATTAGCATCTACTATAG 91653 36 100.0 30 .................................... ATACGACTAAAAGCTTTGATATCGAAGTAA 91719 36 100.0 30 .................................... ATGTCTTGCCCTTTTGTAAAAGTGGCTTCA 91785 36 97.2 0 ........................A........... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.8 30 GTTTTAGATGGTTGTTAAATCAATGATGATTAGAAC # Left flank : AGTGAAGACATATCGAAAAGATATTTAACCCTTATAATTAACAGCTATTCGAGGACTATAGACGAAGAAAATAGAAATAAAGTCTTTAAAGCTTATTACAACCTAGAGACTGTATTGCATGATTCACTTTTACTAGAAGATCTTCCGATAGACATTGACTTTAACGAAGATTTGAAAAAGCTGTTAAAGTTGTTGGAAATTCATTTTGATAGGAGTATATTAACTAATCCATATGCTATAATAGAAACTGTTCTAAAAATTCATCAAAATTATGATTTGGGGACAATTCCTGTATTTTGTAATGTAGCGCATTATGTTGATGAGCAGGAATGGCAAGAGGTAGCTAATCTTGCTATGGAAGTCAATTTAAGTGTGATTTTTCTTGAATTTACTAATCCTCAAAATTTGAAAATATCTAAAAACATTACTTGTTATTATATAGATCAAGATCTAGTCGATTGGTACTAACTGCTATATTAAAATTTGATTATAAAAAATCG # Right flank : CTCCATTACTCCATCATCTGCTTCAATATCTGTATTAAAATACTTTGCTAATTTGTATGCAATATTAATGGTTACATTGGTTTTAGACTTATTACTTTCTATCTTTCTAATATAAGCTACTGATACACCAGTTACTGTGGCTAAATTCTGCTAATCTGTTGTGTATTATTACGCTTCCTAAGTGGTTTTTTGTTGGGTTCAATATATATACTGTTTTATATGGAAGTCAAGCTTGCGGCGCTATGTTAATATACTAATAGCTAGTACTGCGCTTTCATGTATTTAAGGTTTTAGATAGCTGTTAAATAGACGATAATTAGAAACAAAAAGTCTCTTTCTCCAATTAATTGAATCAATCCATGACATAGTACAATTACATAAAGAAAAAACGCGCCAGATAGAGCGCGCTTTTATTTTGCTAAAATAAAGTCTAAGTATGACTAGTTTTGGTCCAAGAATTATTGCCGATTAATTCTCTACCAATTGATCGGTAGGGGATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //