Array 1 2979542-2980229 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080281.1 Pseudomonas aeruginosa strain UNC_PaerCF17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2979542 28 100.0 32 ............................ CGGCTACGCGACCGGCACCAACAGCGCCGCGC 2979602 28 100.0 32 ............................ AGCGCCTGGCCGAACTGGATCACCCCGTTCTC 2979662 28 100.0 32 ............................ GACGTGTGCAGGATCTCGCCGGCGCCGGCAAT 2979722 28 100.0 32 ............................ ACGAACGAACAGTTTTTTCAGGTTTTTCATAG 2979782 28 100.0 32 ............................ ACATGCCCGAACACAGGGGCGCCCCATCCGGC 2979842 28 100.0 32 ............................ AGAACGAGCCCCGTGTATCGGCTTTGGACTCA 2979902 28 100.0 32 ............................ TTTTGGACAGGCCGAGGGGCCGTATCGACGGT 2979962 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 2980022 28 100.0 32 ............................ TCGATCACAGCAAGCCCTACCTGACGGTCGAT 2980082 28 100.0 32 ............................ TGTCCCAGGCGCAGATACACCTGCCCGTCCAG 2980142 28 100.0 32 ............................ CGCTTGTGGTCCAGCGACTGGCCCTTCGCCGG 2980202 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAACAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4334518-4335865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080281.1 Pseudomonas aeruginosa strain UNC_PaerCF17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4334518 28 100.0 32 ............................ AAAAGAAGACGAAGACTTAATGACCTACCCTA 4334578 28 100.0 32 ............................ TGCAACCACAAACGCGTTCTCCGGCTGGAGTT 4334638 28 100.0 32 ............................ AAGCACCCGGATGTGCGGTGCACCCTGATAGT 4334698 28 100.0 32 ............................ TCAGACCGGTAGACCAACCCGCACGGTTCCGC 4334758 28 100.0 32 ............................ GGCTTCCTTCACGCCAGCGTCGCTCTCGATCC 4334818 28 100.0 32 ............................ ACGACCGCAAGACGCGGACCGATGGGGGTGCA 4334878 28 100.0 32 ............................ ATAGGGCCGAATGAAGTTGATGTGCTTGCCGA 4334938 28 100.0 32 ............................ GCGAGGGCGTCGACGCACGCGACCGCGGCGAA 4334998 28 100.0 32 ............................ AAGAACGGCTTCAGGCTGAAGCTAGATGCCTG 4335058 28 100.0 32 ............................ ACGCTCGGGCCGGCCGCCAGCGGCAGCTCGGC 4335118 28 100.0 32 ............................ AGCTTCCGGGCCGATGTTGCCGACCGTGGTAT 4335178 28 100.0 32 ............................ TCAACGACAAGGAGCTGCTATCCATTCTCGAC 4335238 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 4335298 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 4335358 28 100.0 32 ............................ CAGCGCAACAGGCGCATAAGTTCGTTGTAGTG 4335418 28 100.0 32 ............................ CAGCGCAACAGGCGCATAAGTTCGTTGTAGTG 4335478 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 4335538 28 100.0 32 ............................ AAGCTCGCGCGGGCCTACGAGCAACACGCCAA 4335598 28 100.0 32 ............................ AAAGAGGCTGCGCAGCACCGACGCACCTTCGT 4335658 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 4335718 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 4335778 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 4335838 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4345678-4344390 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080281.1 Pseudomonas aeruginosa strain UNC_PaerCF17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4345677 28 100.0 32 ............................ ATGTCCCAGAGCTTGCCAAGCTGCTGGGCCGC 4345617 28 100.0 32 ............................ TCGTCGTTGATGCTTTTCAATATCTTTGATGC 4345557 28 100.0 32 ............................ GATCGACCTGGTGCATACGCTCCGCCTCGATG 4345497 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 4345437 28 100.0 32 ............................ TCTGCGGACGCCAGGCGCCCGGCCAACACGCC 4345377 28 100.0 32 ............................ ATCACGAAAACGCGGCGGCCGTACCGGTTGCC 4345317 28 100.0 32 ............................ ACATGCCGATCCTGCTTAAGCGACGGGATAAT 4345257 28 100.0 32 ............................ AGCACCAGGACCGAACCAGGCGGCGCAAAGTC 4345197 28 100.0 32 ............................ CGTCCTGGACTACGAGCACCAGACCCTAAAGA 4345137 28 100.0 32 ............................ TCGACAAATATCCTGCAAAGCGAATCAGCCGT 4345077 28 100.0 32 ............................ ACAACAGCCGTTCGTCGGAGTTGACCATGCGT 4345017 28 100.0 32 ............................ TCGGATTGGAGCGAGTTGGAGAAGCTACAGAC 4344957 28 100.0 32 ............................ TCTCCGCCCCAGCTATTGCCGGGGAGGGCATG 4344897 28 100.0 32 ............................ ATAAAGCACTTCCACGCCGCGCTTGATGCTCT 4344837 28 100.0 32 ............................ ACCGCCGGCCAGCACACCCCTTGGTCGTTCGC 4344777 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 4344717 28 100.0 32 ............................ AATATGAACATTAGGTACATATCAGGCGGGAA 4344657 28 100.0 32 ............................ TTCACGTTGGGCGTAGGACAGCGCGTCCTGCC 4344597 28 100.0 32 ............................ AACAGCATGGCGTCCACCCGTACCGCCCTCAT 4344537 28 100.0 32 ............................ TACCGTGGCGACGTTGCAACCCGCTGGTCCGA 4344477 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 4344417 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCTTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //