Array 1 1577461-1576699 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAACXY010000016.1 Streptococcus agalactiae strain 3012STDY6252244, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1577460	    36	 100.0	    30	....................................	AGAGACTAGAGATTTTCTTCAGACTTATGA	
   1577394	    36	 100.0	    30	....................................	GTTTTACTCATTCCCACAAAAGTATGTATT	
   1577328	    36	 100.0	    30	....................................	GAAAAAGGATTATGATAATTTCTATCTGCT	
   1577262	    36	 100.0	    30	....................................	GATGAGACCACAGAAGTTAACTATCTCAAG	
   1577196	    36	 100.0	    30	....................................	GCAAATATTTGGATAGTCGACCCTTCCCAC	
   1577130	    36	 100.0	    30	....................................	TAATACTAATTTACTAGCGTCAAATAAATC	
   1577064	    36	  94.4	    30	...........A..C.....................	AATTTCCATAATCTGATCGCCAACCAGGAG	
   1576998	    36	  97.2	    30	..............C.....................	CAAATTATAAAACTTTCATTAGGAGTGACG	
   1576932	    36	  97.2	    30	..............C.....................	TATCTACATGACAAATATTCAAAATTTTGT	
   1576866	    36	  97.2	    30	..............C.....................	CAATATACCAACCAATCCTGTTACCTGATT	
   1576800	    36	  97.2	    30	..............C.....................	CAATATACCAACCAATCCTGTTACCTGATT	
   1576734	    36	  97.2	     0	..............C.....................	|                             	
==========	======	======	======	====================================	==============================	==================
        12	    36	  98.4	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGTATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATCACGATTTTAGAACTCATTAAGGCACTAGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGATTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCAACGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  ATTAAAAGATGATTGTGGAGGCGTTGCAATGTTTTAGAGCTGTGCGGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGGACGTCATTTATAGGTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCAATAGAAGAGATACGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [0-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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