Array 1 242811-241147 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOD01000016.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 85-0486 SEEH0486_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242810 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 242749 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 242688 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 242627 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 242560 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 242499 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 242438 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 242377 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 242316 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242255 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242194 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242133 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242072 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242011 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 241950 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 241889 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 241828 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 241767 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 241706 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241603 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241542 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241481 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241420 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241359 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241298 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241237 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241176 29 96.6 0 A............................ | A [241149] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260194-259068 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOD01000016.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 85-0486 SEEH0486_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260193 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260132 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260071 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260010 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 259949 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 259888 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 259827 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 259766 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 259705 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259644 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259583 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259522 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259461 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259400 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259339 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259278 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259217 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259156 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259095 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //