Array 1 3006026-3004417 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016525.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 09-036813-1A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3006025 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 3005964 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 3005903 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 3005842 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 3005769 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 3005708 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 3005647 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 3005586 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3005525 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3005464 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3005403 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3005342 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3005281 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3005220 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 3005159 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3005098 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3005037 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3004976 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3004873 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3004812 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3004751 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3004690 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3004629 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3004568 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3004507 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3004446 29 96.6 0 A............................ | A [3004419] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3023410-3022284 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016525.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 09-036813-1A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3023409 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3023348 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3023287 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3023226 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3023165 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3023104 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3023043 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3022982 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3022921 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3022860 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3022799 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3022738 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3022677 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3022616 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3022555 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3022494 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3022433 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3022372 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3022311 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //