Array 1 23034-22437 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVEE01000051.1 Bacillus thuringiensis strain AFS059526 AFS059526_105_F9_Contig51_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 23033 32 100.0 34 ................................ AGAGGGCGTTGATTATGTGTAGGAAAGTAATTTT 22967 32 87.5 33 ..........TG..G......A.......... GATAAAGGGTTTGCAATCATAAAAGATATTGTT 22902 32 90.6 6 ...A......G........A............ TCTGAG Deletion [22865] 22864 32 87.5 35 .GGA...............T............ TCAATACATAAATCCAAAAAACTAACAATCGGGTC 22797 32 93.8 35 ...........C....A............... ACAAATGAACGTGTAACAAATGGATTTTTGCTACT 22730 32 93.8 33 ...........C...C................ TATATTGGTCGTACAGTTAAATTAAATCGTCCG 22665 32 90.6 33 ..................AT...A........ CACCCAAATATCGGAAAATTATAGAGTTTTTTA 22600 32 81.2 34 ....T....CT.T......T..T......... CTCAATAGAAATTGTGGAAGTTTGAAACACAAAA 22534 32 68.8 34 A..AA...CCT........TA..C....G... TTTTGTCATCACATCGTATTTACTGTACATGCTG 22468 31 84.4 0 ..........T...-............A.G.C | G [22456] ========== ====== ====== ====== ================================ =================================== ================== 10 32 87.8 31 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TAATTGGCCAAATAAACAAAACATACACCGAACACAACAAGGAACAGGTCCTTATTGATATAAAGGCCTTGATTATTCTCCATAAGTATTACTCATTTGGCGAAAAGTTTCGAAAACATGTCAAAATTATGGTCAACGAGTACAAAATTCAGTGTTTGAATGTGTTGTGGACGCAGCTCAATTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGATGAGGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATGAAATTCCTCGTATATTCGCACCTGAATTTTCATAATTTATGAGTGAATTTTAATATTTTTCATACAGATTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : TGGTAAGATAATTGATAGTAATTTAGTGTCTCTGTTGGAGTAAGAGGACCTGCTTCAGTCCATACGACGACTAGTATTGATCCGATTGACATTATACTAGTATGCAGATTACGACAAGTGTAAGTTCTGAGCATGGGAAGGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATCTTGGAGCTTAGATTTTTTATGGAAGTATTCATATGCAATGAACAAGGAAGACAGATTTCACCAAAGGGGATGCGGAAAAGATTAAAAATGAACTGGTTACATTGTCTGGAAATGATGGGTCAGTAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAACTTGGTCAGTACTCTTCCGCAAAAGTACACCATTTACTGGATATTAAGCGGAACATTGACAAACCAAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATATTTTAAAAGTGGCGATTATTGAT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.39, 5:-1.5, 6:0.25, 7:-0.27, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [20-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 26989-26631 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVEE01000051.1 Bacillus thuringiensis strain AFS059526 AFS059526_105_F9_Contig51_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 26988 32 84.4 34 ......T..CT.GC.................. AACCAATCGAATATAAACGTGGGAAACCGAAAAA 26922 32 96.9 33 ...................T............ CTTAAAGAATACTATGAAATTGAAAGAAGTACA TG [26905] 26855 32 100.0 34 ................................ TTTAATACGGCTAAAGATTTACTAGCTGGATTAA 26789 32 96.9 30 ....................A........... AGTAGACAGAAGATGAAAGAAGATTTCTTT 26727 32 90.6 33 ...A...............G......C..... CCATTAACAAAAATATAAAAAGCATACGTGCCG 26662 32 71.9 0 ....T....C.......C.....AG..AGG.C | ========== ====== ====== ====== ================================ ================================== ================== 6 32 90.1 33 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTATACTGTTTGAAAATGATGCATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAAATCAAAAATTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGGTTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTTTATCAATTTATTAAAGGAAA # Right flank : TGGTAATATGCTTGATAGTAATTTAGTGTCTCTGCTGGAGTAAGAAGAACTGCTTCAATTCATACAGCAACTAGTGTTGATTCAATTGACATTACTAGTATGCAGATTATGAAAAGTATAAATTTTGAGCCTGAGAAGGATAAAGGTTCAGATACGATGGGATGAAGCATCGTGTTGATCTTGGAGCTTATATTTTTTACGGAAGTATTCATATGCAATGAGTAAGAAATACAGATTTTACCAAAGGTGATGCGGAAAATATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGTAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTAACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGAC # Questionable array : NO Score: 6.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.50, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 33966-33273 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVEE01000051.1 Bacillus thuringiensis strain AFS059526 AFS059526_105_F9_Contig51_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 33965 32 100.0 35 ................................ GTAAAGGATTGTAAGAGGACAGTTACGGACATAAA 33898 32 100.0 33 ................................ ACTTACTTTAGCGCAACTAGAGCATATTCATTT 33833 31 93.8 34 .........C.......-.............. CCGCACCCTGCGAAACAATAACAGTTGTTGTCTG 33768 32 90.6 34 .........C.A........T........... ATCATGTCAAAGGCCATTTGCACTCATTGAGGTA 33702 32 93.8 33 .........C.....................C CATTGGTTTATCAGGAGTCATTGGCTTATCTTT 33637 31 90.6 36 T.......-..........T............ ATCATTTGAGTGCGATCTATTTCAACAGCATTTAAA 33570 32 96.9 34 .......T........................ ATTTGGTAGCGCATTGTATATGGATGCACGATTT 33504 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 33436 32 96.9 35 .........C...................... TCAGACGGCTTGTCTTTTTCCGTAGGCTTATCTTT 33369 32 90.6 33 T..........AG................... GGATCAGTAAACGGCAATGAAAAACCCGCCGTC 33304 32 93.8 0 .....................CA......... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 94.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGGTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTGTGAGTTAGCAAAATAAAAGAATTTTTAGTATTCAATATTTTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATTAACTTGATAGGTGGATAGAGAGACAATATGTAGTGAATTTTATTGTAAATTACGACTCCATATATTAAGGGTATTATGAAACTATACATTTTTGTTAATCAGTTAGGTAATAGCTATGAAAATAGGGTCGAACATATTGGTGTAAAAGAATAAATTGATTTAGAAATCTCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTTATACTTTATGGATTGAATTTATAATTTTTATAAAAATTACTTTACTAAATAAAAATATTTTTATACTTTTGAATAGAATTAACGTATTTGTGGTTGATTTTGAACACAAATCGGG # Right flank : TAGTAATGCTCTGGCTTTAAAACGCTCTGCAGTTTAGTAGATACTCAACCGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATAAAATGGAGGGAGATTGAATGACGTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAACATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGATCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATCATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCC # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //