Array 1 1542-1764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHD01000157.1 Piscirickettsia salmonis T-GIM contig00157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 1542 24 100.0 43 ........................ TTATTTTTTAGCGTCTGTTTATTTTCGGAGATAAAACCTAATT 1609 24 100.0 41 ........................ TATCTTTAGAATTTGATTTAATTACTTTTTCTTTATTTAAC 1674 24 91.7 43 ....A...............A... CTATTTTTTATCGTCTGTTTATTTTCGGAGTTAAAGCCTAATT 1741 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 4 24 97.9 43 TTGTGTTCCGTTTGTGTTCCGTTT # Left flank : GATTGTTAAAGTGCACTTTTTTAAAACCAAACTCTTCTAATCCGGCTAGGTCTAAATCAGAAATAACAGTGCTTTGATTATCAATTTCATGTTTAGGTACTGTGTGATTATTTTCTTCAGGTGACTCACTTAACAGTGAGTTTTTAATCTCAAAAAAAACTCCTCTTTGTAACCTATATGAAACCCAACCACCTCTACCATCTTTTCTTGAACTGATAGAAATATAGTACTTATCTTTTAATCTAGCAATTGTTGTTTTAATTGATCGGCTATTTACACCAGCCTTATTCGCAATTCCATTAATAGTAAGTTTTCCAGTAGTAAAATCCATATTATTTTCTTTAGCACTGTCATACATTACCATTAAAACAGATTGTTGTATCGAAGATAATAAATCAATAGAAGGCGTTTCATCTGCTATAAAACCACCGTTAAACTTTTTAGGTTGACTTTCTAGCTTCTCAGCAGTTCCACCTTTCAGTGCATCAGCAGTGTTCCGT # Right flank : TGTGTTCCGTTGACATTTTCCAAGCCCGTCTCATTTGATTTTTCGATATCCTTTTCTTCACTAAGAATTAAATCATTATGTTCGTTATCAGTTCTTTTTTTAGAAGAATTATTATTTGATAGTGCAGACGTATCACCAACCCTTACACTTCTAAAAAGAGCATTAAACTTTGATTTATTCTTTTTACTTGAGCCACTCATAGCTTACTGTCCTTAGCTCAACTTAGTCCAAAGTTCTTTAGAAAGATTATAGTAATCGTCAGCTAATGATGAAGTATTACTATTTTCAATTACCGATAACTGCTCCATCCCACTTTCCTCTGCTACTCCACGCAAAAACCTAATTGATGATGCAGTAACAAACTCTGGAAATAAAACTCGGTATTGGGTTTCAATTTCTTTACTAAGTTTCGTTTGATCTACTTTAGTTGGTACAATAGAAAAGCTATTCCAATTCAGTTCCATGTCTCTTTTAAAATCATTAATCATTTCAATATTAGT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTGTTCCGTTTGTGTTCCGTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //