Array 1 1542-1764 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JRHD01000157.1 Piscirickettsia salmonis T-GIM contig00157, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence         	Spacer_Sequence                            	Insertion/Deletion
==========	======	======	======	========================	===========================================	==================
      1542	    24	 100.0	    43	........................	TTATTTTTTAGCGTCTGTTTATTTTCGGAGATAAAACCTAATT	
      1609	    24	 100.0	    41	........................	TATCTTTAGAATTTGATTTAATTACTTTTTCTTTATTTAAC  	
      1674	    24	  91.7	    43	....A...............A...	CTATTTTTTATCGTCTGTTTATTTTCGGAGTTAAAGCCTAATT	
      1741	    24	 100.0	     0	........................	|                                          	
==========	======	======	======	========================	===========================================	==================
         4	    24	  97.9	    43	TTGTGTTCCGTTTGTGTTCCGTTT	                                           	       

# Left flank :   GATTGTTAAAGTGCACTTTTTTAAAACCAAACTCTTCTAATCCGGCTAGGTCTAAATCAGAAATAACAGTGCTTTGATTATCAATTTCATGTTTAGGTACTGTGTGATTATTTTCTTCAGGTGACTCACTTAACAGTGAGTTTTTAATCTCAAAAAAAACTCCTCTTTGTAACCTATATGAAACCCAACCACCTCTACCATCTTTTCTTGAACTGATAGAAATATAGTACTTATCTTTTAATCTAGCAATTGTTGTTTTAATTGATCGGCTATTTACACCAGCCTTATTCGCAATTCCATTAATAGTAAGTTTTCCAGTAGTAAAATCCATATTATTTTCTTTAGCACTGTCATACATTACCATTAAAACAGATTGTTGTATCGAAGATAATAAATCAATAGAAGGCGTTTCATCTGCTATAAAACCACCGTTAAACTTTTTAGGTTGACTTTCTAGCTTCTCAGCAGTTCCACCTTTCAGTGCATCAGCAGTGTTCCGT
# Right flank :  TGTGTTCCGTTGACATTTTCCAAGCCCGTCTCATTTGATTTTTCGATATCCTTTTCTTCACTAAGAATTAAATCATTATGTTCGTTATCAGTTCTTTTTTTAGAAGAATTATTATTTGATAGTGCAGACGTATCACCAACCCTTACACTTCTAAAAAGAGCATTAAACTTTGATTTATTCTTTTTACTTGAGCCACTCATAGCTTACTGTCCTTAGCTCAACTTAGTCCAAAGTTCTTTAGAAAGATTATAGTAATCGTCAGCTAATGATGAAGTATTACTATTTTCAATTACCGATAACTGCTCCATCCCACTTTCCTCTGCTACTCCACGCAAAAACCTAATTGATGATGCAGTAACAAACTCTGGAAATAAAACTCGGTATTGGGTTTCAATTTCTTTACTAAGTTTCGTTTGATCTACTTTAGTTGGTACAATAGAAAAGCTATTCCAATTCAGTTCCATGTCTCTTTTAAAATCATTAATCATTTCAATATTAGT

# Questionable array : NO	 Score: 2.56
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TTGTGTTCCGTTTGTGTTCCGTTT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.41,0   Confidence: MEDIUM] 

# Array family : NA
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