Array 1 342-736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRN01000208.1 Leptospira weilii strain 56105 Contig208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 342 29 100.0 31 ............................. TGGCCTATGTGATTTTGGTCCTCGTTCAGGA 402 29 100.0 32 ............................. AGGTGGATGAAGGAGCACCCATTTGTGCCATT 463 29 100.0 32 ............................. AGGGACCTTCGAAATCGTTTTGATAAATTTTG 524 29 100.0 32 ............................. AATCAGAAAGCGATCGCGGAGGAACAGAAAAA 585 29 96.6 32 .............C............... AAACGGGCATTCCAGCATCAAATCTCTACGCT 646 29 100.0 32 ............................. CAATTGTTTTCTTGAAACGTGTCGGGGTAACC 707 29 89.7 0 ...............A...A........A | G [733] ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CTCGGGAGATTTTTCTCTATCAGAAAATCATACTTTTTGCAAGTAGAAAGTGGGATTCTTGTCGGAACACTTGAAAAAATATCAGTTTTTGATCCTTATTATTCCAGAAGCCTTCTTAATTTCCGGGGTTGGTTATGATAGCGGGCGTTGTGCCTGAGTTTCATCTACCTTCATGATCTTCAAACACAGAAGTTCCCGCACATAGAAGAACTCAATTACGGGTAAGTTCCCTTAGAAGCATACGTTCTTAATAAGACGATTTGCCATCATAGATTGACTCGAACACAAAACTCAAAAATAGATTGCAAAAAATCTGAATTTATCCTATACAAGTTTTTAGCC # Right flank : ATAGCCAACCCACAAGTAATGGAATCTCAAGACCAACTTGTCGGAATTACGACAAAATCCCCCGTTCCCACCCTTATTTTTGGGTGGGATGACGAGCTCTGCTGCAGAGCGAGGCGCTGAGTTTGGAGGCGGAAAGACTCGGGAAATTTTTCTCTATCAGAAAATTATACTTTTTGCAAGTAAAAAGCCTCATTCTTGTCGGAACACTTGAAAAATATCAGTTTTTGATCCTTATTATCCTAAAAGCCTTCTTAATTTGTGGGGTTGGTTGTAGGCAAAAATAACTTGCCAATTCGTTCCGTATGAGGAATTTCACGCATCATGTGTGATACGTTTGTCGCCACGCCATCTTTTACCGGAACAGGTTCGATGATCTTTGGAACGATTCGGACAGGATGCTTGCGGCGGTTACACGAATTCTTCTTTTTACTACCATAACAGTTTTTTGATCGCAGATTTTCGAAATGCGTTCGTGTTGGAAACCGCGGGAAAATCCTGGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 499-224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRN01000221.1 Leptospira weilii strain 56105 Contig221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 498 29 100.0 32 ............................. GATGAATTGCGACAGCGCTGGAACGATAAGAC 437 29 100.0 32 ............................. AAGAAGACATTCCAATCATTGATACAGTAGAG 376 29 96.6 34 ............................A AGTAAAGCAGAGAAAAGATTTTTCTTCTCTCCTA 313 29 100.0 32 ............................. AACGGTTATGATCCTTCTTTTCCAATGACCAT 252 29 93.1 0 ..........................G.T | ========== ====== ====== ====== ============================= ================================== ================== 5 29 97.9 33 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTAAATTACTTAAGAGAATTATTCCGGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGGGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCGGGCGTTTTTGTCGCCTCCATTAACGCAAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCGATCATGTTGTATTCGAGCAACACGGAACAGGGTTACGGTATCCGTTCTCACGGCGATCCTTCTCGCGAAATTATAGACTTTGACGGTTTGCTTCTAATGTCCAAACCCGATTCTAAACGCGATCAGAAAGTAGTCACGAGTATTTCCGACTTTTCTATGTCCATTGAAAATTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCTAATTCCCTTCTTTTAGAAACAGGTGATCCTAATGAATCGAAAGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGC # Right flank : TGGACTTTCCAATCCGAGACCGGTGTTGTATTTTTATTTTCTATGGTGAACCTTTTTCACATGTTAATTTAACGTGAGTTCGGTATAATAAAATGCGAAAACGATTCTATGTTTCGACCTGAAACGCGATCCATAGAGAGCGTTTCACTGAGTTAACGCGATCCATAGAGAGCGTTTCACTGAGTTAACGCGATCCATAGAGAGCGTTTCACTGAGTTAACGCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //