Array 1 5416-6297 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEE02000060.1 Salmonella enterica subsp. enterica serovar London strain HIY0015 NODE_60_length_13875_cov_18.051789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5416 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 5477 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 5538 29 100.0 32 ............................. CTTCCAGTTTTTTCCCTGCCTTTTGGGCGGCG 5599 29 100.0 32 ............................. TACCTGACGCTGATCCAGTCGATCGCGCTGCT 5660 29 100.0 32 ............................. ATTTTCTTTGCGCCCGTACTCAACGTGGGAGG 5721 29 96.6 32 ............................A TCGCCCCGAGGTCGTTCACGACGTCCTCGTGC 5782 29 100.0 32 ............................. CGTTACTCCAGACAATAGAGCGCCTCACCACT 5843 29 100.0 32 ............................. CATAGGGGCCGCAGAAGTTGCCACAACCACAA 5904 29 100.0 32 ............................. GGGTCAATGTTGATGCCGGGGTGTGTTGTTAC 5965 29 100.0 32 ............................. GGAACTCATGCTTTTACCTGATGCGGCGGCAC 6026 29 96.6 32 ..........T.................. CGAGGCGGCATCAAAGACGACGAAACACCATG 6087 29 100.0 32 ............................. GATTTTCCCGCGTTGGTTGTATGCCGTGCGTG 6148 29 100.0 32 ............................. CGCGTATTAAACGGGCAGATCGAGGAAACAAC 6209 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 6270 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGTGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57404-56153 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEE02000025.1 Salmonella enterica subsp. enterica serovar London strain HIY0015 NODE_25_length_59229_cov_18.338364, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57403 29 96.6 32 ...........................T. CCAGCGGAGAGCGAGCTATACCAGGCTCAATC 57342 29 96.6 32 ...........................T. TCCGGAAAATCTACCGTTCCAGGGCGGGGCCG 57281 29 96.6 32 ...........................T. GGAACCAAGTATACGCGTAGACAGCGTCAACG 57220 29 100.0 32 ............................. GAATTGGCGTATCTGTGTCTTGCCAGACAGGG 57159 29 100.0 32 ............................. CGTAGACCACCTCTTTCGATATGTGAGTGAAG 57098 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 57037 29 100.0 32 ............................. ACATAATCCCCATGTACATAATTTATGCTCCG 56976 29 100.0 32 ............................. ATCCAGCAGAGCTACAGGAACGCCGCAAGGCC 56915 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 56854 29 100.0 32 ............................. TTAAATGCATCGCGATCCCTTGCAATTATAAC 56793 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 56732 29 100.0 33 ............................. GGCACGTTTACCGTTCCGGCTGGGGTTTATCGT 56670 29 100.0 32 ............................. GGCGGATCCACGATAATTTTGTCGTTATGTAT 56609 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 56548 29 100.0 32 ............................. GCGCTATTGTATATCGACCATAAACATCGGCT 56487 29 100.0 32 ............................. TCCCTGCTGGCCGTTCTGGAATTGCGTAGCGC 56426 29 100.0 32 ............................. CCGGAGCCTGACCAGGATTTTTCCGCCGTGTA 56365 29 100.0 32 ............................. GAATTGCAGGAGTGGTTTATCGAGTGTTTACA 56304 29 100.0 32 ............................. AATCAACGGATCTTGCTAATGTAGTTTCTGCA 56243 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 56182 29 93.1 0 A...........T................ | A [56155] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGTGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCATGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGTCACACAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //