Array 1 467237-469094 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFQ01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2183 NODE_2_length_649924_cov_4.29777, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 467237 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 467298 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 467359 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 467420 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 467481 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 467542 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 467603 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 467664 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 467725 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 467786 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 467847 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 467908 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 467969 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 468030 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 468091 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 468152 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 468213 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 468274 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 468335 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 468396 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 468457 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 468518 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 468579 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 468640 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 468701 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 468762 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 468823 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 468884 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 468945 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 469006 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 469067 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 485776-487515 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFQ01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2183 NODE_2_length_649924_cov_4.29777, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 485776 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 485837 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 485898 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 485959 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 486020 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 486081 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 486142 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 486203 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 486264 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 486325 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 486386 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 486447 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 486508 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 486569 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 486630 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 486691 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 486752 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 486813 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 486875 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 486937 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 486998 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 487059 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 487120 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 487181 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 487242 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 487303 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 487364 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 487425 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 487486 29 100.0 0 ............................. | A [487513] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //