Array 1 121339-116955 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEQA01000002.1 Aggregatibacter aphrophilus strain C2009017515 C2009017515_S25_ctg_1642, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 121338 32 100.0 36 ................................ TAATTTTAAACTAACGCTATAATCATTATCAAAAAT 121270 32 100.0 33 ................................ ATTTAATAATTGATATAATTTCCCTCTATTTTT 121205 32 100.0 34 ................................ ATTTAATAATTGATATAATTTCCCTCTATTTTTC 121139 32 100.0 35 ................................ ACGTTTGAATATTGTAGAGACTTCGCCTAGACGAC 121072 32 100.0 35 ................................ TTGATCGAATATGTTGATTGGCGAACACTGGAAAA 121005 32 100.0 37 ................................ ACCGCTAACAACATAAAATAAAACAAGCTATAACCCA 120936 32 100.0 36 ................................ TTGATCGAAGATGTTGATTGGCGAACACTGGAAAAG 120868 32 100.0 35 ................................ AATTAAAATTTTAAATAGTCTCATCAGTAAATTGT 120801 32 100.0 35 ................................ AAATAAAAACCTTTTTCTTTAATTTGTTTTAAAAA 120734 32 100.0 35 ................................ AATAGTTTTAGATTTATCATTTTCAAAATATTTAA 120667 32 100.0 35 ................................ AATTAAAATTTTAAATAGTCTCATCAGTAAATTGT 120600 32 100.0 35 ................................ AATTAAAATTTTAAAAACAATATGTTTTTTATTGC 120533 32 100.0 33 ................................ AAATAAAAACCTTTTTCTTTAATTTGTTTTAAA 120468 32 100.0 36 ................................ TAAAAAAGAATCAACATGCCAATAATAAAAATTTAT 120400 32 100.0 33 ................................ CTAGATCAGTGATTGAATCTTTTATTAAAGGTG 120335 32 100.0 35 ................................ AAAAACTTATCAATTGATAAAAATCGACTCAAAAT 120268 32 100.0 35 ................................ ACGACAAAAAGAGACAAGGCGTATATCTCAATATA 120201 32 100.0 34 ................................ CTCTTTCTTTATTGCCCGCCTTTCGGCGGGCCTT 120135 32 100.0 36 ................................ TGAGTTATCTATGAGGATTGTAAAAATGAACAGAAA 120067 32 100.0 37 ................................ ATTGATACTGCAACCAAAAAAGGTACGCAATCCGCAG 119998 32 100.0 36 ................................ AACGGCTTATAACGAATTGCAAGCCAAGCCTAAAGA 119930 32 100.0 36 ................................ TTGCCCAGAAAACAATGGCGCCAAAGCAACTATAAC 119862 32 100.0 35 ................................ ACTTTTTCACCAACCAAGTTGTCATCCAACACCTA 119795 32 100.0 34 ................................ AGTAAGTTATCTTAATATTTCATATAAGCCGTGT 119729 32 100.0 35 ................................ CACTCGGCGGAGATTTGCTCGCTTGCCAAGTGGTC 119662 32 100.0 34 ................................ GACGTAACTTTGACATGATTTGCGTATTGCAATA 119596 32 100.0 35 ................................ CAAACTAACTATCTCGAAATGGTGTGCGCTTATCT 119529 32 100.0 33 ................................ TTGCGCGGTTAAAATTAGGTCTAATGTAATTGC 119464 32 100.0 34 ................................ AAACGTGCCGTCTTTATTGAGCCGTACTGCTTCG 119398 32 100.0 35 ................................ TCCTAATTTGTTTTGCAGATCGGTTACTTTGGTTA 119331 32 100.0 34 ................................ AGTCTTGGTAATATTAAGGCTTGGATTAGTAAAG 119265 32 100.0 34 ................................ TTAGTAGCCCCCTCCGCCACCGGTTCCACTGGTA 119199 32 100.0 35 ................................ CTGCATTGTTTAAGCTGTCTACGGCGGCATAATAT 119132 32 100.0 34 ................................ GCTTGATGCTGCTAGCATATCGCGCCAGCCGTAG 119066 32 100.0 36 ................................ CAGCGATATGCAGTTATTGTAACATATTTATCATCT 118998 32 100.0 36 ................................ TTTGCCAACTGATACAGTTGAGGTAGGATTACTTCC 118930 32 100.0 37 ................................ TAAAGGTATCTAATTATTAGAAATTATAGGAAAAATG 118861 32 100.0 33 ................................ AGTTGCTAAATCAGGAATGAGCCGTAAAATGCG 118796 32 100.0 33 ................................ GTTTAAAATTAGAATTAAGTTTTAATATTAGTG 118731 32 100.0 35 ................................ ACGGTCATTTTAGTGATTTTGATGGTGACTGGTAG 118664 32 100.0 36 ................................ TAAAAATGTTTTGTAAATTTTGTAAACCGTAATCAT 118596 32 100.0 34 ................................ CTATAATTTCTAATAATTGGACGGCGTTACAAAT 118530 32 100.0 34 ................................ CATTACCAACCTGTGAACAAACTTTCCTTTATGT 118464 32 100.0 36 ................................ AACAGAACTCATGCCGTCTTTTAAAGATTGTGAAAT 118396 32 100.0 34 ................................ ATCTTTTTGTCAAAATTATTGTCAATCGCTTAAA 118330 32 100.0 36 ................................ TAACCACTTTTGCAAATACCCTAGCTTTACTATTAA 118262 32 100.0 34 ................................ TATTCGATCTTAAACTTGTCTATAAATTGTTATC 118196 32 100.0 36 ................................ TATTGAAATAGTCATTTGATTATATTGAAAATTAAG 118128 32 100.0 35 ................................ TGTTTGTCGGCATATACTGTTGACCGCATAATTGC 118061 32 100.0 34 ................................ TTCAATCAACTCCGCCATATACTTGATTTGTGCA 117995 32 100.0 36 ................................ ATTGACATGATTTTATAAAATGCTATTATATGTATC 117927 32 100.0 35 ................................ AAAATATCATTGGCAAATAAATTTTCACAAAATTG 117860 32 100.0 35 ................................ AAGATTTTTAACAATACCTTTAAAACCTAGTTTTT 117793 32 100.0 36 ................................ ATATCCATATATCAATCGTGCAAAAAATAAACAAAA 117725 32 100.0 37 ................................ ACTTTTAGGTAAATCATTTAATTTTACGCCTTCTTTA 117656 32 100.0 35 ................................ TCGATCGAAGATGTTGATTGGCAAACACTGGAAAA 117589 32 100.0 35 ................................ ATAGAGATTAATAAAACGTTGTTGACAATCCATAA 117522 32 100.0 36 ................................ GATGGATTTTATGTTTTTATATTTTGGTTAGAAAAT 117454 32 100.0 35 ................................ TAATACAAAAGGCCCTAGCCTTGTTAGCTTCTTAA 117387 32 100.0 38 ................................ TATTTGAGGGGACAAATTAGGGGACGAAAGGGACGCGA 117317 32 100.0 35 ................................ AAAATGTCCGCTCTATATAGAAGCAATAAGGGGCA 117250 32 100.0 33 ................................ CAGCTATATGGTGGGCGTGCTCTACGCCGGTTG 117185 32 100.0 34 ................................ TTGCGAAGAAAGCAACCAGAACTATGGATAGCCG 117119 32 100.0 34 ................................ CACAATGAAAGAACGCTCTAATTCAGCAAATAAC 117053 32 87.5 35 ......A...T..G.T................ GGCAAAGGCCACGGACAAGCAAAACCGATTGAACG 116986 32 87.5 0 ......A...TT.G.................. | ========== ====== ====== ====== ================================ ====================================== ================== 66 32 99.6 35 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAATGGGCAAGCGCGATTGCGTCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGCGATGTCACGCCTGACCAATGGGTCATGTTGAAAAATAAACTGTTGGAAACCTACGACCCTGAAACCGACAGCCTGCGTTTTTATCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCAGCAGTGGATGTATTTAAAGACGTGCTTGTTATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATAAGTTAATCTATTTGTATAACGGCGGTATGGCCGTTATACTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCTGCTGATTTTTCTTGCTTTTTTTATGTAGGGA # Right flank : AAGATGTCGAGCAAGTCGTGCTCATTTTGTGCGGTGGCAACCACCTTTGGGTGAGTATATATTTTGTCTTTACGAAAAATAAGTGATGTATAAGTTTCAAGCCTTTCTGCAAAAACGTCTGGAAAATCCACCGCACTTTTCTTTCATAAAAATAAAAAGCTGAACCTCTTTCGAGATTCAGCTTTTCTTTTTGGGTTAGATCATTTTAACAGCTCTTTTTGTTGACCTATGCTGAAATATTGTTACATTTTCGGAATTTCAACGCCTGAAGAGAGCAGGTCTTGAATATCCGATTTCAGTACATCAGCTTTTGGCCCATAAATGGCTTGAATGCCTGTGCCTTTAACAATGAAACCCATTGCGCCTGCTTGTTTCCAAGCCGCTGCATCACCCACCAGCTCAGGGTTGTGAACGGTGATACGTAAACGGGTCATACAAGCATCCACCTCGGCAATATTGTTGCGCCCACCGAGAAGATTGATGATTTGCACCACTTGTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //