Array 1 217035-216272 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCI01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2701 NODE_1_length_524849_cov_1.49604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 217034 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 216973 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 216912 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 216851 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 216789 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 216728 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 216667 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 216606 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 216545 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 216484 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 216423 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 216362 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 216301 29 93.1 0 A...........T................ | A [216274] ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234872-233317 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCI01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2701 NODE_1_length_524849_cov_1.49604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 234871 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 234809 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 234748 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 234687 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 234626 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 234565 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 234504 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 234443 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 234382 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 234321 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 234260 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 234199 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 234138 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 234077 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 234016 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 233955 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 233894 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 233832 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 233771 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 233710 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 233649 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 233588 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 233527 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 233466 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 233405 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 233344 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //