Array 1 985-2453 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN716132.1 Pseudomonas aeruginosa strain DR1 scafold156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 985 28 100.0 32 ............................ ACAACTGAGGGGTTCTGCAACTACACGCTCAA 1045 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 1105 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 1165 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 1225 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1285 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 1345 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 1405 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 1465 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 1525 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 1585 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 1645 28 100.0 32 ............................ ATCAGCAACAACGGTCACGCGGGTTCCCTGCT 1705 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 1765 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 1825 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 1886 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 1946 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 2006 28 100.0 32 ............................ TGGAGAGTGACCCGGTCAAGACCGAGGCCGAG 2066 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 2126 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 2186 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 2246 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 2306 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 2366 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 2426 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12423-11434 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN716132.1 Pseudomonas aeruginosa strain DR1 scafold156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12422 28 100.0 32 ............................ TTGCTGCGGTCGAGCATGTCGGCCTCGAAGGT 12362 28 100.0 32 ............................ TCGAGCCAGGCCCTCGTGCTGCCCTCGCGCGT 12302 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 12242 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 12182 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 12122 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 12062 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 12002 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 11941 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 11881 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 11821 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 11761 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 11701 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 11641 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 11581 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 11521 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 11461 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCANNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29411-28282 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN716069.1 Pseudomonas aeruginosa strain DR1 scafold78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29410 29 100.0 32 ............................. TACCACCACAGCCGGCCGAACTTCCCAGGCCC 29349 29 100.0 32 ............................. TGCCGGGAAACCGATCTGCCCTGGCCGGTCGA 29288 29 100.0 32 ............................. AGTTGCGGAAATGACAGAGATGTTGCGGAAAT 29227 29 100.0 33 ............................. TGCATAGTGGCGTCGGTTGTAGCGCGCGGTCTG 29165 29 100.0 32 ............................. GTAAATGTTGAGCTTCTCCGGCTTGCCGAGGA 29104 29 100.0 32 ............................. GTATCCGACTAGTGCTTGGGCGCCTGGGGCTG 29043 29 100.0 32 ............................. GCGTCTTCCCAGCGGATACGATAGAGCGTGCG 28982 29 100.0 32 ............................. CAGATATATAGAGATTCCTGAGGACACAAGGA 28921 29 96.6 32 ................G............ GTATTGACGTGATGCTCAAATATAAGAAATGA 28860 29 100.0 33 ............................. GCCGTACGGGACGGCCGGATAGCCTTGCCAATC 28798 29 100.0 32 ............................. GGGCGGTACATTGACGTCATGATGAAATCCCG 28737 29 100.0 32 ............................. CACCTCGTCCATACCAACATCCCTATCTACTC 28676 29 100.0 32 ............................. CAAACTGCCCATGTGTGGCGGGGTCGGGTGAA 28615 29 100.0 32 ............................. ATCGGCGCGCTGATGCAGCAGATAGTCGACTT 28554 29 100.0 32 ............................. TAGTAGCGGAACCCGACCGTCTGTGCCTTCGG 28493 29 100.0 32 ............................. TCGCCGGTGCGGCCGTGGGGCTACGAGCGGCC 28432 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 28371 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 28310 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGTGTGTTCCCCACATGCGTGGGGATGAACCGCGTCCACAACTGATGCAGGGGCGGTCCCAGTCGTGTTCCCCACATGCGTGGGGATGAACCGAGAAAGCGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAG # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39368-39032 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN716069.1 Pseudomonas aeruginosa strain DR1 scafold78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39367 29 96.6 32 .C........................... AGCTTCCTCATCCCGAAATGTCGTGATTGGAG 39306 29 96.6 32 .C........................... TGCACGTCCAACCCGTTCTTCGCAACCGTCTC 39245 29 100.0 33 ............................. GAGCTCAAGCTGGGTTCCCTCGATCAACTGATC 39183 29 100.0 32 ............................. GTACAGGCCGCGATTATCACTGTCAATACGTC 39122 29 96.6 33 ......................C...... CTGATCCTCAACGACCGCACAGTTACTCAGTAC 39060 29 89.7 0 ..............C..........G.T. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 96.6 33 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCAAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTATCGACATCGATGGTGACCAGGCTGGTCCGATGTTCCCCCACAGGCGTGGGATAAACCTGTCTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCACCCCCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //