Array 1 7964-6105 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000019.1 Thermobifida halotolerans strain YIM 90462 scaffold19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7963 29 96.6 32 ............................A TATGGACATCAGGCCGTGGACGGTCATCGGCT 7902 29 100.0 32 ............................. CCGTCTGCGCGCTCCCCGCCGGCCACGACACC 7841 29 100.0 32 ............................. GTTGCTCACCGGGTTGCTCGTTGTCCTGCTGT 7780 29 100.0 32 ............................. TACGCCAACCGACCCGGGTTGTCCCCGAGCGC 7719 29 100.0 32 ............................. GTCATGCAGACCGCCATGCAGCGAGCCGCCTA 7658 29 100.0 32 ............................. ATCGACGTCACCCTCACCACCGACGTGTACGG 7597 29 100.0 32 ............................. CGTGCGTCGAGTAGCGGCGGAAGTACGGGCCG 7536 29 96.6 32 ............................T CCGCGCGCGGACGGTGAGAGCCCGGCGAGCGC 7475 29 96.6 32 ............................T CCATGTATCGGCGATCTGAAACGGCGGCTCAC 7414 29 100.0 32 ............................. CCCCCATGATCATCGACGACTCCCCGGCCGTG 7353 29 100.0 32 ............................. ACCTGGTCGAGCCGGGCGACGAGGTCCCCACC 7292 29 100.0 32 ............................. TCCACGCAGCGGGCGTAGTGGAACTGGGCCTG 7231 29 100.0 32 ............................. GTTCGCCGGTCGCAGTATGCGGGCGGGGTTGT 7170 29 100.0 32 ............................. TCGGCGAGGCCGGGCATCTTGTCCTGGCGGCC 7109 29 100.0 32 ............................. TTGGTCTGGTCGTAGCACGCGGCCTTGATGAT 7048 29 100.0 32 ............................. TTCTGCCCGGACCCGTACTCCTCCCGCAGCGT 6987 29 100.0 32 ............................. GCAGCCCCTGGTAGGCGAATTCCTCGACGATC 6926 29 100.0 32 ............................. AGGATGGCGGGCATGCCGTGCTGCAGGGCGAC 6865 29 100.0 32 ............................. GAGCCGCGTCTGCCCGTGCTGTTGCAGTTAGC 6804 29 100.0 32 ............................. AGACGGGAGCGATAGTGGTCCGCATGCGCTAG 6743 29 100.0 32 ............................. CCGTAGCCTCTGATCTGCCCGCGTCCGGGGTG 6682 29 100.0 32 ............................. GCGGCGCGGGTCTGTACGGGCAGGCTGCCTTC 6621 29 100.0 32 ............................. TCGAGCACCCCACGGCCACAGAACTTCACCGC 6560 29 100.0 32 ............................. GTCATTGCAGCGCTCTCTTCAGGGGCGGGGAG 6499 29 96.6 32 ............................T GGTCTTCCTGCTGGCCGTGGGGGGTGTGCTGC 6438 29 100.0 32 ............................. ACGAACGGTTGGATGCTCATCGGTCCCCCTAT 6377 29 100.0 32 ............................. TCGACGTCGCCTACGCCGGCGGCGGCTGGCAG 6316 29 96.6 32 ............................T GGTTCGTCGCCGAGTGGACAACTGACGTCGCC 6255 29 100.0 32 ............................. GCGCACGCGCCGCAGTGGTGTTGGATTACGCC 6194 29 96.6 32 ............................C AGCGCGCAGGACATGGGACGGCTGGTGGCTGC 6133 29 93.1 0 .....................C.....T. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.1 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CCGACCAACTGCACCGTATCGTCGACCTGATGCGCGAGTTGCGCGGCGCGGAGGCCCGCCGCCACACCCGCCTGGAGGTCCCGTTCTACACCGGCAGGCGCAAGAGCGTGGCCGAACTGGTCGAGTCGCTGCCCTAGGGCTTGTTGCCGAAGCGGCCGGGCCCACGTCAGTGCGGCGGCCGGGGTGATCGCGACCGCTGTGGCGGGCCCCGGGGGCCTGCCGGGCCGTGGTTGCCCCGACCGCGAGACCGGTGTGGGTCTGACCGCTTTCAGCGCACGTTCCGGGGTGGGGATGTGCCGTGAGGCGGGGAGCGGTCCGGGGTCCGCGCCCGCTTCCCCGACCGGCCACGGCCGTCGCTCCGGTACGCACGGAACGCTGCGGAGGATCGCTGTGAACGGGTTGCTTCCGTGGAACTGGTCTAGAATGCTCCTGCGGCTGGAGTTCGCTCACGGGGCGGATAACGCGGAGATAACGCCCCGCAAAACCGCAGGTCAGCTTCT # Right flank : TACGCGACGGGCAGCATCACAGTGCCCCCGAAGACAAGGAGCTCCGGGGGCGCTAAACAGCGAACGACCTACTACAGGCGCCCTGTCTTGATCTCCGCCAGGAACGCGGACCAGGCCGACACCGTGAAGTCCAGGTGGCCCGACTCCCGGTGCTGAGTGTCACGCACCAGCACCGCACGCGGAGTCTCCGCGACCTCGACACAGTGTCCGCCACTTGGGTTGCTATAGCTGGACTTGTGCCAGCTCAGATCATGGGTACTCATGAAAACTCCTGCTGAGCTTGTGCGATGAGCTGAAGGGACGCCTCTTGAGGTAGAGCAGCTCCCCGGAGGTCTCCGTAGTGTCGAGCGTAATCGGCAACTATGCCCGGATCATCAGTGGGCGTACCAGAGTGTCGAGTTTCCGTGTACAGCACCGTTCCTTGGTTGGGCACCATGAACAGGGAGAACGCGTGAAACAGGCCAGGGTGTCGCTCGGTCTCGAAGGGGATGACCTGTAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 990-1171 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000002.1 Thermobifida halotolerans strain YIM 90462 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 990 37 100.0 35 ..................................... TACGACGGGGAAACCCCGGCCACCGAGGGGCTGCC 1062 37 97.3 36 ......A.............................. AACAACATCGCCGACTTCCTGCCCATCGAGATCGAG 1135 37 89.2 0 C..........TT......A................. | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 95.5 36 GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Left flank : GGTGGGCCACCAGGGGATCGAACCCTGAACCCGCGGATTAAAAGACCCCTCGACGGCGAGGGAAGAGGCGTTGCGGGGATGGGGCGGAAACCCCGGTGGAGTAAGGGATGCCGGTCATGCGGCGGGGTAGGCACTTCCGGCACTGCGGTACCGAGGCTGCGGTTCGGGGAGCCACCGAATGCCGGGCCGTGCCGCGCGGTGCCAGCGACGTACGGAACTTAAGAGCCAACACGGAGCGAACATGGTCCGCATTGGTCCGGGGGCTTTGTTTCCTGGGCCTTGAGAGCCGGTCTCAAGATCTGTGACAGAGGGTCGGAGTAGTATCCAGTCCGACACCTTCCCCCATAAGACAGCCTTGTTGATGCTGTAGTTCGGAACCTGAAGTGGTCATGGATCTACAGGGAGGTTCCCAAGGAGGTTCGTGCCTGCTTGGGAACTTTCACTCCTTTCTGAGTCGTGAGCATCGCCAAGCGATGTGGCGTTTGCGCACTTCAGGCGCC # Right flank : CATGAGCAGAGTGGGTGAGAGCTGGAAAGCGGGTTAGCTCTTGGCTGTCACTGGCGGGATCTGGCACGTTTTCTCAGCTCATACGGTGTGCAGTAGGCTGTCAGTCCCTCTGCCGCGGGCTTCGGCGGTGCCGCTCCTGGCCCCGCTTTCCCTCTCCGGTGCCGACGCTGTGGCAGCGTCCTGATCGCGGTCTGCCTGCGGTGCGGCTGCCCGCTGCCCGTCGGGTGTTCGCGGGGCCGCCTTCCCTGGTGGGCGTCCGTTTCTGGATGTTTGACCAGGGAGGTCTGTGATGGGGTTCGGTACTGCTCCGCTGCGGATGGCCGAGCGGGAGTTCCTGCGGCTGGTGCCCGATGTGCTGTGCGTGGACGGCGGCGGTTTCGACGGGCTGGAGGACCGCGGCTACGGACTGGTGGAAGTCCGCGACGTGCTGATGGCGCGCACCACCGAGCAGAGGCTGCGCGATGAGGTGTGGCGGCGGGTGATCCGCTCGGCCCGGGTCT # Questionable array : NO Score: 3.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 856-277 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000026.1 Thermobifida halotolerans strain YIM 90462 scaffold26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 855 30 96.7 31 .............................G AGTACCCGCCCGGGACGAAACTGTTCCAGCT 794 30 96.7 31 .............................A TCGTCGCCGCCTTCTACGACTTCGGTGTCTC 733 30 100.0 31 .............................. ACTACCCCCAAGCCGAACCGACCAGCGTGAC 672 30 96.7 31 .............................G CTGAGGTTCGGGTCGTCGATGAACTCGTTGC 611 30 96.7 31 .............................C TGTCCGGGCGGCCCGAGCGGGTGCTGTCGCC 550 30 96.7 31 .............................G GCCAGACCGACATGCGAGAGCGCGCCGCCAT 489 30 100.0 31 .............................. ACTACCCCCAAGCCGAACCCCCGGTGAGTGA 428 30 96.7 31 .............................C TCAGCACAGCCGCCCGCGTCGCCTGGGCAGT 367 30 96.7 31 .............................A GTGAGGGCTGCGACGTTTTCCAAGAAGACGA 306 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 10 30 97.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : CGGAGCCGACATGGAGTCCGGCCGCAACTACGCCGACGCCTTCGAACACGGAGTGATCTGGTGACCGTCATCGTGCTCACGAACTGCCCCGCAGGACTGCGGGGCTTTCTCACACGCTGGCTCCTGGAGATCTCCCCTGGCGTCTTCATTGGAGGCCCTTCAACCCGTATCCGAGAGGTGCTCTGGGCCGAGGTGAAGGAATACGCAGGCAACGGGCGCGCCCTGCTGGCCTACAACACCGACAACGAGCAGGGCTTCGCCTTCAAAACCTACGACCACAAGTGGATCCCGGTAGACCACGAAGGCTTGGTGCTCATCCGTCGGCCCAGCGAACCGCAGACTGTCACCTCACAGGTCAAGCCCCAGGGGTGGAGCAAGGCAGCGAAACGCCGCCGATTCGGGAGGCGGTAGTAGTTCGAGTGCCAATGGCTGATTTGTCCGATTTTCAAGAAGTGAATGAAATCCGCTCCGACGGCAGGTAAAGGTGCAGGTCATTCAGT # Right flank : TCCCCGGTGCGCCGTAGATCCACGCGAGAGAAGTGCTCCCCGCGCATAGAGATTTCCGCGCGTGGGTTTGGAAACTCCGTCACCGCTTGCTTCACTTCCCTATTGGTGAGTTCGCACCTATCTGTCAACTGATAGGCAATCGGTTGGCGTTCTGACGGTTTCGTCCTCGGATGTTGGCGAGTGCGTCAAGCGCGGTGTCGTCGGCGTTCGGGAGCGTGTGCAGGTAGCGCTCGGTTGTGGTGATCGATGCGTGGCCGAGGCGCTCCTTGACGACCAT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2251-1751 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000025.1 Thermobifida halotolerans strain YIM 90462 scaffold25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 2250 31 83.9 32 AA........AT............T...... TCGTAGGCGACGGTGCGCTTGAGTTGGTGGTG T [2246] 2186 31 100.0 37 ............................... AGGTGCTCAGCTCCGACGAGGAGGGCCGCCTCTACGC 2118 31 100.0 40 ............................... TGGGGTTGCTCCCATGCGCACAGTGGGCATTCCACATCGT 2047 31 100.0 37 ............................... TGGGTTGGTGAGGAGGGCCCGGAACTGGTTCATGTGG 1979 31 100.0 35 ............................... GGGTGCTGGCGGATCGTGTTGATGTGGCCGGTGAG 1913 31 100.0 35 ............................... CCGACCCCGACCCCGACATCCCCACCCCGTCCCTG 1847 31 100.0 35 ............................... CCGCAGCTCTTTGCGCAGCTCGGACGGGAACTTCC 1781 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 8 31 98.0 36 GTTCCTCATCGCCCCTACGAGGGGCAGCAAC # Left flank : ATCCGCCGCAAAGACCAGTCCCTGGTCATCGAGCGCGAGAGCGGTGACTCCGTGCACATCCCCATTACCGACGTTCGCGACCTCATCGCCTTTACGAGGCGTGGCAAGTGGTGAACGGGGACGCGCGTCATTGCCGTCTGCGGCACGGCCCAGGACCACAACCTGAAGATTCTGCGCACCTGCCGCCGCTGCCTGCACCATGTACAGCGCAGTGTTTTCGAAGGGCAACTCTCGCCAGCTCAACTCCGTCGTTTCCAGAGCGGTGTCAGCGACTTCATTGACCACGGGACGACCACGTCATCGTCTACAAGCTTCCTCTTGGTGCTGAGTTTCGCCACCACACCATCGGACTCGACCGACTAGCCCCAGCGATATCCTGTTACCCCGCCAGCCTCCGTTTTTCAGCGACACGCGGGGGTCTGATGCACGACCGGAGGCCCGCTGAACAAGCCGTCGAAACCGACCCCTGGGACCGGAAGCGACCAGCGGCTTTACCCTGG # Right flank : GGCACGACGCCGATGCCCTCGCGGTCGGGGTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTACACCGACTCCTACGGGTTCCTCATCGCCCCTACGAGGGGCAGCAACCTCCAGTAGGGCGACCGCCTGGCGGATGGTCCACGTTCCTCATCGCCCCTACGAGGGGCAGCAACTAGGCGTCCGCGGCCTCCACGAGGAAGCGTTGCGGTTCCTCATCGCCCCTACGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCATCGCCCCTACGAGGGGCAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 10493-10721 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000025.1 Thermobifida halotolerans strain YIM 90462 scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10493 30 96.7 36 ......................A....... TGCCTCGGAGCCGCCGGAGCCGCGGGAGCCGCAGGG 10559 30 100.0 37 .............................. TATGTTGGGCGCGAGCGGCTGCAGTAAGCAGGTCTCG 10626 30 90.0 36 ..................A....A....C. CCCGGTGGAGGGGCGATGATCTACGAGACGGACACC 10692 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 96.7 37 GTTCCTCATCGCCCCTACGAGGGGCAGCAA # Left flank : CGGAGAACAAGCCGATAGCCGCACTGGAGGGCACCCTGTCAGGGTGCCCTCCCCCTCGCAGGGGCGATGAGAGTGAGCAATGACGCGGTTCAGGACAGCTTCAAGACCACGTCAACAGTTTTGCTACCCCTCACAGGGCCACGTGTGCCCTCCAAGAGAGCACACGGTCTGGGACGAGGTCCTCGTCCCTGCCCAGTCTTCCATGGAAGATCGCAAGATCGGCAAAGCTTGGCTCTGCCATACTCAAATTCTCTCCCCAGTCCCCCACTTCCCCAAGTGGTGAGGAACGATCGTTGTCGGCTGTGACGGACGGAGAACACTTTTCCCAGAACTGTCATCCCACCGTGATCAGCGGTCATTCCCAGCACCGTCCCGCTGCTACGCCTTCCCACCCCTGTTTTCAGCGACACGCCGGGGTCTGATGCACTACCGGAGGTCCGCTGAAAAAACCACCGAAACCAGTCCCTGACACCGGGGCTGACCGGCGGCTTTACCCTCGG # Right flank : AGACCGGGTTGGACGGATACCCTCACGTTCCAGGTTTCTCGTGGACGGCCCGCTTGGGGCCGTTGTCGCATCTCGGTCCAGGTGTTCAGGGGGCTGTCGGCGGCCCTTCAATGTGGACGGCCCGCTTGGGGCCGTTGTCGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACGGCCGTCACCGTGCCGGAGCCGCAGAACCTTCAATGTGGACGGCCCGCTTGGGGCCGTTGTCGCGGCCTCCCCGGCCAGCCACGGCTTCAGATACGGGCGCCTTCAATGTGGACGGCCC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCATCGCCCCTACGAGGGGCAGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 11527-11129 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000025.1 Thermobifida halotolerans strain YIM 90462 scaffold25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 11526 37 100.0 35 ..................................... GAGGTGCTGTCCAGCGACGAGGAGGGCCGCCTCTA 11454 37 100.0 35 ..................................... ACGCTGGCCCTGGTCGGGCTGCTCGGTCCAGTCTG 11382 37 100.0 35 ..................................... TCCTGGGCGACCGGGCACAGGTCCTCGGGTGGCAG 11310 37 100.0 35 ..................................... ACGCTGGCCCTGGTCGGGCTGCTCGGTCCAGTCAG 11238 37 100.0 36 ..................................... CGCCCGTATCTGAAGCCGTGGCTGGCCGGGGAGGCC 11165 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 35 GCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGG # Left flank : GCCCTTCCCCTGCTGCGCTTGACCGGCGACGGCAACCGGCCGCAGGCCACCCTGTGGCACCGCCACCGCAAGAGCCGCATCATGGTCTGGCCCGTCTGGAAACCCGACCTCGACCTGGACGCCGTCCAGGCCCTCATCGAGCACCGCGCGCTCAGTCCCCGACCCCGTACTGACGACGACCAGGTCCCACCTGTGCTGTCCCGCCGCCGCCTCGCCCCCCTCGGCGTCATCACCGCCGCAGCCGCCCAGCGCCGACTCGTCCCGGGAGGAAAATCAGCAGGAGTCCTCGTCCCCACCCCCGTCCATCTCGAATAGAACACACGCCGCCCCGGTCAACTCGGCACAGACAGGAGCCCTCTTGCCCAGCCGCTTGGGAACCTCCAGTGCACACCACAACCCCAGGAGGTTCCCAAGCAGAAAAACAGACACCATGGTCGGTACTTCCCAAAACTCCAAGCGGTGTCAGTCGTCTACCAGACGAAAAACCCTGGTCAGACGGA # Right flank : TTCTGCGGCTCCGGCACGGTGACGGCCGTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGGGCCGCCGACAGCCCCCTGAACACCTGGACCGAGATGCGACAACGGCCCCAAGCGGGCCGTCCACGAGAAACCTGGAACGTGAGGGTATCCGTCCAACCCGGTCTTGCTGCCCCTCGTAGGGGCGATGAGGAACGGTGTCCGTCTCGTAGATCATCGCCCCTCCACCGGGTGGCTGTCCCTTGTAGGGGCGATGAGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.10,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 4 19019-18470 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000025.1 Thermobifida halotolerans strain YIM 90462 scaffold25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 19018 37 100.0 35 ..................................... CTCGTGTAGCCGATGAGCTGGGCTTGCCTCCTGTG 18946 37 100.0 36 ..................................... TCATCGGCGCCGTGGTGCGGGTGCTGGTGGTCCGTG 18873 37 100.0 36 ..................................... TCATCGGCGCCGTGGTGCGGGTGCTGGTGGTCCGGT 18800 37 100.0 38 ..................................... GAGAAGGGCGGCATCACCGACGGGCGGTCCGGCAAGGG 18725 37 100.0 35 ..................................... GGTCTGGGCGGCTGCGCCTGCGCCACCAGGTAGGC 18653 37 100.0 35 ..................................... GGCGTCTACCTGCGGCGCGGCGCGGGCGCGCTCAC 18581 37 100.0 38 ..................................... GTGTTCGTGTTCCAGGAGCGCACCCCGCCGTACCTGGT 18506 37 91.9 0 .............................G.....CA | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.0 36 GCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGG # Left flank : GGGATGGGAAGCCGCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGGACCACCACGCCCCCGCCCGCCGTCTGACCGGTGAGGCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGGAGATCCACAGGTCGGCGCTGACCTACGGGCAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : GGTTTGCCTGGTGATCTCTCTGTTCGGGGAATTTGTGGTTTTCTGTTCGGTTTTGTTGTTCTCCTGATTCTTGTCGTAGGCGGCCAGTAGAGTCTTTTCTCCCCTGATTGAAAGCGCGGTCGTCGTATGACTTCCGTGCCCGCGTGGGGTTTTCGCGATTGTGGGAGGAGTGGTGATGTCTGCCGGTTTTGTCGATGTTCTGCTGGAGGCGGTGGGTCCTGGCCGGTCGTGGGCGGGGGTGGTGATGCGGTCGGAGTTCCGTCCGGCCGCGGGGGAGAAGGTGTTTCCGCCGTCGTATCCGGTGAACGAGCGGGAGCCGGGTGCGACGCCGTACCTGTTCGAGACTCGGTGGGTCGGTGACCAGGAACGCGATGTGGTGGTGTTGGACCAGCCGCCGAGCCAGGCCAACCGGGTGGAGCAGGCGCTGCTGGAGGCCCGGGACGAGGGGCGGATTCGGCTGCCATTGTTCGAGCTGGTCGCGGACACGTCGCGGGGGCCGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.10,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 5 19723-19397 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000025.1 Thermobifida halotolerans strain YIM 90462 scaffold25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 19722 37 100.0 35 ..................................... ACTGCTGATCAGCACTGCTGATTCTGCTGCCTACT 19650 37 100.0 36 ..................................... TTGGCTCAGGGGCCGGGGAGTCCGATTGATCACCGG 19577 37 100.0 35 ..................................... TCTGGATGGACAACGATGCGGCGGGATGGGAAGCC 19505 37 100.0 35 ..................................... ACCACCACGCCCCCGCCCGCCGTCTGACCGGTGAG 19433 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 36 GCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGG # Left flank : CCCCGGGCCGCTACGCCTGGGCCGAACCACTCAAACACACCATCAACGCCGCCGTCGCCGACACCACCCACACCATCGCCGTGCGAGCCCTGGCCAGCGGCGACCTCGCCCCGGCCCGCGAAGCCCTCATCAAGATCCTGGAGATCGACCCAGTCAACGAGCTGCTCTACCGCGACCTCATCCGCCTGGAACACCAGGCGGGAAACCCCAAAGCCATCGACCGGGCCGTCCAGCGCCTCACCATCGCCCTGGACACCCTCGACCTGGACATGGAACCGGCAACCATCGAACTCATCAACCAAGTCACCGCAAACAGGTAGATTCTCATCGCAGTAGCAGTCGGTCTCATGTGAAGGTGGCTCGATGTCCACTTCGGAACCCCAAGCTCTCATCCAGCCCCCGGGAGGTTCCGAAGTCAGAAACGGACAAGAAGGCTTAAATCTTCTCGTCCTCTTGCAGTTGTCTGGCTACTTTCCGAAGCACCCCCTGAACAGAGGGAG # Right flank : AGATCCACAGGTCGGCGCTGACCTACGGGCAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGGCTCGTGTAGCCGATGAGCTGGGCTTGCCTCCTGTGGCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGGTCATCGGCGCCGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.10,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 6 34828-32929 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000025.1 Thermobifida halotolerans strain YIM 90462 scaffold25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================= ================== 34827 29 100.0 71 ............................. CACAGCCAGTTGTGCGTCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 34727 29 100.0 32 ............................. CGGCAACCCCGGCCAGCACGCCCCAGACGGCC 34666 29 100.0 32 ............................. CGGTCGCACACCTGACCGCGCCGACCTGGGGG 34605 29 100.0 32 ............................. GAGGTCGTCACCGGTCAGCGAAGCATCGAGGA 34544 29 100.0 32 ............................. CACAGCCAGTTGTGCGTCTACCTGGGATATGA 34483 29 100.0 32 ............................. CACAGCCAGTTGTGCGTCTACCTGGGATATGA 34422 29 100.0 32 ............................. CACAGCCAGTTGTGCGTCTACCTGGGATATGA 34361 29 100.0 32 ............................. CACAGCCAGTTGTGCGTCTACCTGGGATATGA 34300 29 100.0 32 ............................. CACAGCCAGTTGTGCGTCTACCTGGGATATGA 34239 29 100.0 32 ............................. CGGCAACCCCGGCCAGCACGCCCCAGACGGCC 34178 29 100.0 32 ............................. CGCGAATCCTGACCCGCTTCCCCCGGGGGGCG 34117 29 100.0 32 ............................. CGCTCCACATCGGGGTCGGCCAACTGCTTCTT 34056 29 100.0 32 ............................. CGCTCCACATCGGGGTCGGCCAACTGCTTCTT 33995 29 100.0 32 ............................. CGCTCCACATCGGGGTCGGCCAACTGCTTCTT 33934 29 100.0 32 ............................. CGCTCCACATCGGGGTCGGCCAACTGCTTCTT 33873 29 100.0 32 ............................. CGCTCCACATCGGGGTCGGCCAACTGCTTCTT 33812 29 100.0 32 ............................. CGCTCCACATCGGGGTCGGCCAACTGCTTCTA 33751 29 100.0 32 ............................. GCCTCGGTGGGGGCGACCGGCAGCACGAACCA 33690 29 100.0 32 ............................. CTCGAATCCTGACCCGCTTCCCCCGGGGGGCG 33629 29 100.0 32 ............................. GACGCGGTCGTGACTCAGGTCGACGACGGAGC 33568 29 100.0 32 ............................. CGCTCCACATCGGGGTCGGCCAACTGCTTCTT 33507 29 100.0 33 ............................. GCCAGGAACGTGACGAGGGGGGGCGAGCCACGC 33445 29 100.0 32 ............................. GCTCCTCGTCTTGGCCCTTATGCGGCTGTGGT 33384 29 100.0 32 ............................. TGGTAGCCACCACCCGTGACCCGCTGGTGAAC 33323 29 100.0 32 ............................. CCTCCCGCTTCAACGGCCTCCAGGACCCGGTG 33262 29 100.0 32 ............................. GTCGAGTTCCTCAACGCCGTACCCGCGCCGAC 33201 29 100.0 32 ............................. TTCTTCGTCCACTCCCGGGTCTTGCGCTCGAT 33140 29 100.0 32 ............................. GATTACGCCTACCTGCTGTACGCACTCGTCAA 33079 29 100.0 32 ............................. GTCTCGCAGTTCTCGCCCGTGTCCCGCGCATC 33018 29 100.0 32 ............................. CGGGAGCAGGCCGCCCGCCTCGGGGCCACCCG 32957 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ======================================================================= ================== 31 29 99.9 33 GTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : GATGATCATCGCCCGCCGGTGGCGCACGGTGTCCGTGCTGTCCCGCCCACCCTGCCAGGGGACACGGACCCAGCGAACCTTCCCGGCACATCCCAGACCGGAGTCCACACGACGGCCAGCCCTGCCATGGTGAGGGAGTAGTGACACCACGGACGGAAGACGCGAGTGAAAGCCGAGGCCACACCGCCGTAGTGGTACGCGACTCCTGTGACCATGACGCGGGCCACCTCGCCAGGTCGGGAGCGTGGTTTGTGAGGTCCTCCGTTGCTCTTGCCAGGAGACGATCAGGTGGAAGTGTCCGCGGTCCAGCACGAATCGGCCGGGTCCGGGCTGCGGTGCTCTGTTCGGCACACATCTCAGGGGTTGTTCCCGGGACAGTGACACGTTGAGACGGTTCCACAAAGAGCTTTGCGTGTTCTTGAAGTTTGACTGTTTTGTCTGATTCTTTAGAAGTGAATGAAAAGAGCGTCAGTGGCTAGTATATTCGCAGGTCATTCAGA # Right flank : TAGGGGCCGACCCTGCAGATCTTTTCTCGATGCCAGACCCTGCCTTCCCCGCCCAGGCGAACAACCAGGGGAGCCAGAAGGCCGCAGGGTTTTCTGGACTTCACCGCTGGTGAAAAGTCCCAATGTCGGGGTTTTGGGATTCAATATCCTCAATTCCCCAACCGTTCGGTGAGTGCTTCGACCCGCTCCGGCAACTTGCCCGCACGGCACTCGGCCAGGGCGTCCAGGCATTCCTTGACAGCAACCGTGCTCTCCTCATCGAACCCGCTCCGCTTTGCCAAGGCACGGAAGATCCGCACGTCGCTGAGCCGTACACGTACCGCTTCCGCCGGAACCCCCAGAGCCCGCAGAGCACCGGAGACGAAGGTGATGACCTCGGCATCCGCAGCCACCGAGGCGACCCCGAGGACCCCCGAACTGGCGGAACTCCCGTTCCTTGCCCGGACCCAAGGTCTCCACGGCCTCGTTGCGCCAACACAGCAGGTCGTAGAACACCTTCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17870-16074 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000028.1 Thermobifida halotolerans strain YIM 90462 scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 17869 30 100.0 38 .............................. ACGACGCCGACGTCTGGCGCGTCCGGGAGCTGGTCCGG 17801 30 100.0 37 .............................. AGGGGGCGCGGCTCGCGCCCCTCTCATGGGTCACAGG 17734 30 100.0 37 .............................. AGGGGGCGCGGCTCGCGCCCCTCTCATGGGTCACAGG 17667 30 100.0 37 .............................. TCCTCCAGGGCCTCGATACGGCGCAGCCGCTCCCGCG 17600 30 100.0 35 .............................. CAGAGATCCGTCTGGTGCGGGATGGTCTCCCCCGG 17535 30 100.0 36 .............................. CCGCCACCGCCCGGCCCACCGGCAGAGGACTGCCCC 17469 30 100.0 34 .............................. CCGGAGAGATCGAACCTGGAGAGTCACCCACCGA 17405 30 100.0 34 .............................. GGTGACGTGACCCTCCGCCGACGTAGGACCTCGG 17341 30 100.0 34 .............................. TCGGGGGCTGGCATGCGCACCCTGGTGTACTCCG 17277 30 100.0 37 .............................. TCCGCTACCTGCTGGTATCTGCTGGTCATCTCATCTC 17210 30 100.0 35 .............................. TGGCCGTGCCCCTCCTGACCGTCGGCGTCATCTCG 17145 30 100.0 34 .............................. ATCCGCCAGCCGCGGGCGCTGCCGGTGCGCCCCC 17081 30 100.0 36 .............................. GCGCGCTCCCTGCGGCGGTCGCTGATCCAGCCCATG 17015 30 100.0 34 .............................. CTGTCCATCGTGCTCAACTGCGCTGGGCACTGGC 16951 30 100.0 34 .............................. GTGGCAGGCCGACGCCCGGCGCGCTAGGGCTGGC 16887 30 100.0 36 .............................. GCGGCCTCAGCCTCGATCGCGTCCAGGTCGACGTGG 16821 30 100.0 34 .............................. CCGGACGCCTCATCCGCAAGGCCCGCGCCTACGG 16757 30 96.7 34 ..........................T... GCCGTGCTGGCCGCGCTGGCCCTGGGCACACCAG 16693 30 100.0 35 .............................. ACCCCAGTTCGACGGCGCCGACCAGCAGCATGCTG 16627 30 100.0 35 .............................. GCGACCTCCTCCCACGACGGGAGCGGCCGGTCCCG 16562 30 100.0 35 .............................. ACGGCGATGACCTGTCCCACGTCGTCACCTGGATG 16497 30 100.0 34 .............................. CCCTGCCTACGCCGCGCCTCAGCGGCGCGCACAC 16433 30 100.0 35 .............................. ACGGCGATGACCTGTCCCACGTCGTCACCTGGATG 16368 30 100.0 35 .............................. ACCGAAGAGCTGGTCTTGTCCACAGGACCTCCCGA 16302 30 96.7 39 ...........C.................. ACGGCCTACCGACCCTGTGGTCCCTGCCTGCGGGCACCA 16233 30 100.0 34 .............................. ACCGGCCCGGCGCCGACGTGTCCGACCACCTGGC 16169 30 100.0 36 .............................. ACCGTCACCCGCGGCGGCGCCTCCTCGACGGGCCGG 16103 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 99.8 35 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Left flank : ACCACCGATCCCTCAAGCGCAAGGTCAGCTATGAGGAGCTGATTCACCTCGAAGCCCTTAAGATCGTCCGCCTCTGTCTCGAGGGGACTTCTTACAAACCCTTCCGGCCCTGGTGGTGACCGTGTTCGTTGTCGTGGTCTATGACACGCTCGCTGAGCGCAACCCCAAGATCCTGAAGACCTGCCGCCAGTATCTTCACTGGGTTCAACGCAGCGTTTTCCAAGGGGAACTGTCTGCAGCCCAGCACCGCTCCTTCACCGAAGCAGTCAAGGGAGTCATCGACCTAGAGTACGACAGTGTACTCATCTACCGTATGCAGACGCATCACGCCGTACAGACCGAGACGATCGGACAGGAGTTCTCTAGCGGCAGCCCTGTGCTGTGATCGTGAAAGGGCTGCACCCTTTTGACCTGCGATGTTGCACTACCGGCGGTCTTCTGCAGAACAGCTTCTCCACAGGAGTGGGAAGAGGGTTGCAACCTGCGACTTTACCCTCGGG # Right flank : ACACGGTCCACCAGGAGAACGATCCTGCCTGTCATCGGGGTGGGGGCCAGTCGGGGCGGGTGGGGGGTGGGGGCAGCGGTGTGGCCGCGGGTTCTGGGGTGTGGGTGAGGGCTTGGGCGACCGACTGGGTGGGGGCGTGCAGGACGACCAGGTGGCCGTCTTCGTTTTCGGCGATGACGGCGCGGATGGTGTAGCCCCCAGGGGGTCGGTGCTCCTCAGGGCCGGGGGATGCGGTGCGCCCAGGCCGGTGAGGAAGGCGTGGATGCGGTCGAGGTCGCGGAGTTGGAGGCGGCCGTGTTCGATGCGCGAGACCGTGCCTGGGTCAGTCCGGTGAGGTGGGCGAGTTGCTCCTGGGTGATGGGGGTCAGCGTGCGGGCCTGGCGGATGAGGGTGGTGACGTCCAGGCGCGCCACGGCCCGGACCACGACCGGATGAGTCCAGAACTCGGTGGGAAAGACCGGATGGGTGGGGTTGAGTTCGCGGGCGGTGATGGCGGCCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 19505-18811 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000029.1 Thermobifida halotolerans strain YIM 90462 scaffold29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 19504 30 100.0 35 .............................. TTGATGCGGGCGCCGTCGCCGTGGTGCCGGTACGG 19439 30 100.0 37 .............................. GCGTGGCCTGCGCGCCGTCCGGCATCGTCGTCCTGGA 19372 30 100.0 37 .............................. CGGGCCTGGGTGGCGTGCGCCCACCGGCACACCTCGA 19305 30 100.0 37 .............................. GTGTGCACGCGGTTCTCCTTCTGACGGGTCTTGCGGA 19238 30 100.0 37 .............................. ATGCCGAGGTCGACCAGGGCGGTGAGGGCCTTGCCCA 19171 30 100.0 36 .............................. CGGAGGGCGGGGGTGCCGCCCTGCCGGGCGGCCTCA 19105 30 100.0 36 .............................. TGGCTCTGCGTCAGGTAGACCGGGCGGGGTCCCTGA 19039 30 100.0 35 .............................. GTCCGGTGCGGATCTGAGCCGGACATGGCGGCGCG 18974 30 100.0 38 .............................. ACGTTGTCGTGGACCAGGGGGCACGGCTCGGACTCGAG 18906 30 100.0 36 .............................. ACAGGAGCGCACGCGCGAACGTGCCGAACGGTCTCG 18840 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.7 36 TTCCTCATCGCCCCTACGAGGGGCAGCAAC # Left flank : CACCCCTGACAAGCCGATCACCACGAAGTCTTTTCCACCGCTCATCCAGTCCTGTCCTCCACGACGCCGTCTCTTCGACATCTGAATCTAGGGCCATACCAACCCTCTTGTCTTCGGTATGGCCAAAGAGCCCCAAGCGCCGCTTTGTGCCCTTATCTGGCATGCAGGAACAGCAGGAAGTCTCTCCACGAGATCGGACGGAGATGAATCTGTCCGCCCATGTTTCGCATTCACGCTGTTGTGGGCATGACTGAACGAATCTTCAGCAACAGAGAGGACCATGAAGAGGGGATCGGCCGCAGCGACAGCGACCCTTCGCTACTCTGCTGCAACGTCGTCTACTAGGAGGAACCACGCAGCAGCACATGTACTCGTCGGCGCTCCGCACACCCCGGTTTTCAGCGACACGCCGGGGCCGGATGCACAACCGGAGGTTCGCTGAAAAAATTCACCGAAACCAGTTCCTGGGACCGGGCATGGCCAGCGACTTTACCCTGGGG # Right flank : ATCCTGAACTTTCTTCGGGAGGAGTCCCTTTTCTTACTGTCACATCCTGTCGGTGGGTAGGTCTTCACCTCGGTATCTAGATCAAGACGGACAGGCCGAGAGAAGGCATGGAGACGACACGCTCACCTTTGCGGTTGGGCTCACTATGCACTACCTACGGCGAGCTTGACCTCGGCGTAGACACCGTGAGGCCCTGTTGCCCGCTCCGCGCACACCGGCGTCGTCCGGGGCAGGCGCCCGCGCCCCTGCCGTCCGTCGATGGGAACACGTTCTTGGGGTGCCCTCGCCGCATTCCAGGGGACTCGGCCAGTGAGACGCCCCCGTCTGGCTTCTGCTCGGTTGGAGTGCCTGATGGCGTTGGTCTCGCTCAACGGGTATTCGGGTACCCCGAGCACTCATCGGGGTTCGATGGTCTGCTTCCGCGGCGAAGGCGGTTCCGCCGCCACTCCTGGCGAGGCCGAGGTGTTCCGCAGAACTCTTCAGAAGTGNGCCTGCCAGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCTCATCGCCCCTACGAGGGGCAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 29692-29004 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000029.1 Thermobifida halotolerans strain YIM 90462 scaffold29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 29691 31 100.0 33 ............................... TTTTCAGCGAGAACGGTCAAGTACTCCCGTGCT 29627 31 100.0 34 ............................... CCCATAGGGCCGCGTCGATGTCCTCCGCATAGGA 29562 31 100.0 35 ............................... TTGACATGGCGACTGTCCCGGGACGGGACGTACAG 29496 31 100.0 35 ............................... TTGACGACTAGCTGGTCGCCTTGGGGGGTGGTGTG 29430 31 100.0 35 ............................... TTCTCTCGCGCGGTGATGGGCGCGCACGCCGTCAC 29364 31 100.0 36 ............................... GGGTAGAGCGGCCACTCGTAGCCGGTGTCGTCGGTG 29297 31 100.0 32 ............................... CCGAAGGACGCGCGCACCAAGCACGCCCGGAA 29234 31 100.0 36 ............................... CCGAGCAGACCGTGGACCTGACCTCCGGGCTCGTCA 29167 31 100.0 34 ............................... TCGGTCGCCTTCTCCTCCTCGGTCGGCTCGACGA 29102 31 100.0 37 ............................... TCCACGGGCAGCGTCTCAGCGGGGACCTCGTGCCCGT 29034 31 96.8 0 .......................A....... | ========== ====== ====== ====== =============================== ===================================== ================== 11 31 99.7 35 GTTCCTCATCGCCCCTACGAGGGGCAGCAAC # Left flank : CGCCTGGGCCGCCGCCGGAGTCAGCATCCCCCGCGTCACCACCGACCAGGTCAGGATCGGCATCCCGGTCGGGTTGGACGAACTGCAGCCCGGCGACCTGCTGTTCTACGACACCGGGTCGGGCCCCTCACCCAGCCACGTCACCATGTACGTCGGCGACGGCCAGATGGTCAACGCCCCGAGGACCGGAACCACCATCCGCGTCGAACCAGTGCAGAGCGACTACTACTCACCGAGGTTCGTGAAGGCGGTCCGCCCGGCAGGATGATCACAAGCCTCACAACCACCCGCAGCGATACGCACTTCGCTACGCTTCTTCAGCAAGAAGAGACCACGAAGCCGGTCCCCGCCAGGAGCCATGACAACACCTTCATTCCCCACCCGCTCTAGCCCTGTTTTTCAGCGACACGCCGGGGTCTGATGCACTACCGGAGGTTCGCTGAAAAAAGTCACCAAAACCGGTCCCCGGGACTGGGGGTGGCCAGCGACTTTACCCTCGG # Right flank : ACGGTTCTTTGCACTCCTTTATTCGGTCTTGAGAGAAGACCCCATTCCTGTCTTCTCTGTCGACCATGCCAGTCACCCATTCCCGGATTCCTGCGTGAGCGTCTTCGGTGGCGACTACCAACTTCTTATCCTGCCTGCGGTCTTTCCACAGGTGAACAGTCGGCTGATCGGGACCAGGTAGAAATTCGGCGAGGAAACCGAACGAGAACAGTCTCCAGTACTCACCCAGTCCTACCGGTCGCAGCCATAGCGGAGAGGCGCGACGCAATTTCTCCGCAGCGCTACCCCTACCTCGGTCGGCATGTACCTCGATCTGCTTCTTGAAGACAATGGGCAGACCCAAAGCCCCGAGCGGGAACTCTTCTTCGGGGCCGTTGACTACTTCCAACCATTCATGAGTCTTGACTTCGGGGTGGTACCGCACTCCCGGAGTATCCGTTGTCGCACGGAAGTACCTTAGTTCACGGCCAGCCCAGCACAGTACGTCTTCCCAAGAGGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCATCGCCCCTACGAGGGGCAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 3599-2532 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000034.1 Thermobifida halotolerans strain YIM 90462 scaffold34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3598 29 100.0 33 ............................. CGGAACGACATGCCGGTCACCGCGCCGTCGGCG 3536 29 100.0 32 ............................. GGGTGGCCGCGTGCTGGGTTACCGACCGGCGC 3475 29 100.0 32 ............................. AGATTCACTCCACCCGAGATCCGGGGTTGCAG 3414 29 100.0 32 ............................. TTCTGTGGCCGTGGGGTCCTGGACTCGGCCGA 3353 29 96.6 32 ............................T CGGCGATGGCGAGGAGGAGCAGCCGCTCCTCC 3292 29 100.0 32 ............................. CGTCGCTTCGCCTCAGCGTTGCCGCCGCGGGT 3231 29 100.0 32 ............................. ATCAGGCGGCGTGGTGGGGTACTCAGGCCGTG 3170 29 100.0 32 ............................. GCGCAGGCGCTGCTCGCCGAGGTGTACTCGCT 3109 29 100.0 32 ............................. GGGGTGTCACCCTCACCCGACCCCGCAACACC 3048 29 100.0 32 ............................. TCCAACCAGCTCGTCAGCGTCATGTCGGGGCT 2987 29 100.0 32 ............................. CGATCCGTAGCACCAACAACGACACCGGCTAC 2926 29 100.0 32 ............................. ATCTGCAACCCCGCCATCCCCGTGTAGGAACC 2865 29 100.0 32 ............................. CCATACATTGGAATCTCCTCTGCTAGGGGAGG 2804 29 96.6 32 ............................T ACCCGCGCCGCGCCGAACTCGTCGCCGCCGAA 2743 29 100.0 32 ............................. TACCGCAAGCCCTACCACGGCAAGCCCGCCGG 2682 29 100.0 32 ............................. AGGACCGAATCCGGATCCGCGTTGAACCGCTC 2621 29 100.0 32 ............................. CCCGCCTTCCGCGCGGCTTCGTCCACGGCCCG 2560 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.6 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CCACCAACTCCGAGGCCATGGTCAAGATCGCGGTGATCCGGTTGATGGCCACGCGGCTGGCCGACGAGAGCGCGCGTTGGAGCAACCGCCCTGCCGACCAAGCCGTGTAGCCACCCGCATACCCAACAGTCACTTAGGGGTTGGTGTCGAAGTGGTCGGATCCGTGTCGGTGTGGCGGTCGGGGTGATCGTGGTCGCTGTGGCGGGTCCCGGGGGTCTGCTGGGCTGTGGTTGTCCCGGCCGTGTGACCGGTGTGGGCCTGACCGCTTTCGGTGCATGCTCCGGGGTGGGGCTGTGCTGTGAGGTGGGGAGTGGTCAGGGGTTCGCGTCCGCTTCCTCGATCGGTCACGGCCGTCGCTCCGGTACGCACGGGGTGCTGTGGAGGACTGCTGTGGACGGGGTGCTTGCGTGGAACTGGTCTAGAATGCTCCTGCGGTTGGAGTTTGCTCGCGGGACAGGTAACGCGGAGATAACGCCCCGCAAAAGGGCAGGTCAGCTTCT # Right flank : CCCGCGGCCCTGGCCGAGTTGGGCAATCCCGCCCGTTTCCGCGACCTCTTCCAGAAGGGCATCCGTATGACGGGGGACGGGTTCGCCCTCGATCCGAGTCTCTTCCCGCTCCGGATCGTCTCCAAGCCGTTACCCCAGGTTGTCTCCTGCGTTCGTCGCGGCCACCTGCCCGCCCCGCGTCCCAGGTAGCGCGCTGCGAAGTGTTCACGCTGACCTCGCCGCCGCCCTCCAGGAGCGGACCGAGCAGATGATGGTCCACCTCGCACGCAGGGCCCGGGCTCTGAAGCGGCCGCCGCTCACCTCGCGGCCCGTTGAGAGAGGGCCGACTTCCTCGGTCTTCGGCGGTGGCCGACCCGCTGCCATAGCCGTCTCTTTTCATCTTAGTGGGAATGGCCCTAATTTGGGTCGAGGGAGGAGGCCTGGTGACATATTGGATGTCGTGGACTGGTTGAACGGATAGAGGTTTTCTCTGGGGTCGGGGCGCCTCCCGGTGTGGTCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 15436-17127 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000033.1 Thermobifida halotolerans strain YIM 90462 scaffold33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 15436 29 100.0 32 ............................. AGGAATGGTCGAGAACACGACTACGGTCCGCT 15497 29 100.0 32 ............................. GGGTCGGACTGGTCGGACGTGGACTCTACGCA 15558 29 100.0 32 ............................. ACGACCAGTTCCATCCAGTCGTGGCCGGTGAG 15619 29 100.0 32 ............................. TTCCGCGGCTGGGCCAGCGCCATGAACGGATT 15680 29 100.0 32 ............................. GGCATGCGGAGCTTCTTGTCGAGCCAGTGCGC 15741 29 100.0 32 ............................. GTCAACGCGCGCGGCGGCGCCGTGGTCTACCT 15802 29 100.0 32 ............................. CGAGAATCCGGGGTCCACAACAACCCCCCAGC 15863 29 100.0 32 ............................. CAGTAGCGCATGAGCACCTACTTCCTGGGGTA 15924 29 100.0 32 ............................. GGCGCGCCCTCGACGAACCCGAACGCCGCCTG 15985 29 100.0 32 ............................. AGGCGGCGAGAACACGGAAACACTGTTCCCGG 16046 29 100.0 32 ............................. GACCTGGACCCGATCCTCAACCCCGACTCGGT 16107 29 100.0 32 ............................. GTGTTCCTCTCGTCAGGCCGCGATGACAGCCT 16168 29 100.0 33 ............................. CCCCCGCTGCCCATCAACCCGGCCGCCACCGAC 16230 29 100.0 32 ............................. GCAGGGACCAGGCCCGCGCCGCCGCCGGAGCC 16291 29 96.6 32 ............T................ GCCACAGGGCATCACCCCCTGTCGCGCTGGTC 16352 29 100.0 32 ............................. ACGATCACACCCGGCTCCTCTTCAGCAGCATC 16413 29 100.0 32 ............................. CGACGTCGACGACTTTCATCTTCGCGTAGACG 16474 29 100.0 41 ............................. CGGCCCTCCTTCGCCGACAGCAGGCGGCCCAGGCCGCGGGT 16544 29 100.0 32 ............................. GCGACCCCGCCAGCAGCCAGCCCCCAGACGCC 16605 29 100.0 33 ............................. CAACCCCCAGAGAGGACCACGCCATGTGCGAGA 16667 29 100.0 33 ............................. CAACCCCCAGAGAGGACCACGCCATGTGCGAGA 16729 29 100.0 33 ............................. CAACCCCCAGAGAGGACCACGCCATGTGCGAGA 16791 29 100.0 33 ............................. CAACCCCCAGAGAGGACCACGCCATGTGCGAGA 16853 29 100.0 33 ............................. CAACCCCCAGAGAGGACCACGCCATGTGCGAGA 16915 29 100.0 32 ............................. TTCCCGGTTTCCTCATTCATCCGCGTCGCGTA 16976 29 100.0 32 ............................. GCAGCGATGACCAACTCCAGGAGGCGCGGGTC 17037 29 100.0 33 ............................. CGCCACCTGGACCACGTCGCCCCGCCCCCGCCC 17099 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ========================================= ================== 28 29 99.6 33 GTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : CATCTGCGCGCCGAGCCCGGCCAGCGCGGCGGCCAGCGCCCCCGCGACCGTCCACGGGGACAGGGCGGCCAGCGCGGCGCCCGCCTCCTCCCACCGGGCGCGCAGCGCCACGGCGGCGCAGCCCAGGACGGCCACCACGACGGCGGCGCGCACCCACCGGCTGGCACGGAGACGGCTGATCACCCGGCCAGCCTAAGCCGTCCCGGAGAGGGAACCGGGCGCCGATACCGACGGGCTGGAAGGAGGTGAGGGGGCACGGTCCCCTCCGGGGTTCGGGGGAGGGCGGGGTGTTCCACCCCGGCCGTCCGGGATGGGCGGCCACCGGCAGCCGGTGGTGTCCCGTCGTGGGGGTTGGGGTGGAATGTCTCCGGCCCGGGACCGGCACGCGGCCTCCGTACATCCGGTGCCGCACGAAACTCCACCTGGCGGGTGTTATGTCCGATTTTCGGGAAGTGAAGGAAACCGGCCCGTGTCCCTGGTAAAGTCCCAGGTCGTTAAGT # Right flank : CGCGGCGCTGAGGCGGTGCGGGTTCTTCTTGGAAGTGTTAGTGGCCAGTTGAGATTCCCCGGAGGCGGCCAGTTGCTGGGGAGCTATCTGGCCATCCGACACCACATCGGGTAGCCAAGCGTGTGGAGCAGGTCGGACTGATTCGTGTGGTGGTGGCGAGGGCGGTCCGACGCACAGCGATCGGCCACTGGAAGGCGACGACACAGGTCCGCGGGGGTAAGCGAGAGCGCCGACGCGGGAGCTGTCCTGGCGCGTTCTGAGGCCGCCGTCAGTGCGATGCGTTCTCGACGGCCCGTTGTCGTCACCCAATGTCGTGATGGCCGCCAGTGGGGACCACAAGTGGCCGCCCACGGGGAGCGACAACCGGCCGTACTCGCAGAATTCCTGGTGGCCGCTGACATTGGAGGTTCGGGGGAGGGCGGGGTATTCCACCCCACCACGGGGGGGCTGGGGTGGAATGCCTCCGGCCCGGGACCGGTACGCGGCCTCCGTACATCCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17724-18179 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000033.1 Thermobifida halotolerans strain YIM 90462 scaffold33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17724 29 100.0 32 ............................. CCCAGGTAGTGGGGCGGCAGCCCGGTCAACCC 17785 29 100.0 32 ............................. CCCAACTCCGGCAAGCCGCCGTGGAGCAAGGC 17846 29 100.0 32 ............................. ATTCACTGCCGCTCGTCAGGCAGATCCTGGAA 17907 29 100.0 32 ............................. CCGATCATCCCGATCGAGGACCGCACGGTCGA 17968 29 96.6 32 ............................G GCGGGGTACGGTCCGAAGCCGGACGTGACCGT 18029 29 96.6 32 ............C................ TACGACAACGCGCACACCCCACCCACCGGGTG 18090 29 100.0 32 ............................. CCGAGAGGCTCGCGGACTCCGATCGAGGAGGC 18151 29 89.7 0 ............C.............T.G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTGCTCCCCGCGTATGCGGGGATGGTCCC # Left flank : GACACCACATCGGGTAGCCAAGCGTGTGGAGCAGGTCGGACTGATTCGTGTGGTGGTGGCGAGGGCGGTCCGACGCACAGCGATCGGCCACTGGAAGGCGACGACACAGGTCCGCGGGGGTAAGCGAGAGCGCCGACGCGGGAGCTGTCCTGGCGCGTTCTGAGGCCGCCGTCAGTGCGATGCGTTCTCGACGGCCCGTTGTCGTCACCCAATGTCGTGATGGCCGCCAGTGGGGACCACAAGTGGCCGCCCACGGGGAGCGACAACCGGCCGTACTCGCAGAATTCCTGGTGGCCGCTGACATTGGAGGTTCGGGGGAGGGCGGGGTATTCCACCCCACCACGGGGGGGCTGGGGTGGAATGCCTCCGGCCCGGGACCGGTACGCGGCCTCCGTACATCCGGCGCCTCACGAGACCCCCACCTGGCGGGTGTTATGTCCGATTTTCGGGAAGTGAAGGAAACCGGCCCGTGTCCCTGATAAAGTCCCAGGTCGTTAAGC # Right flank : GAGACGCGGCCCCTGACGCTTCTCTGTCGAGCGGTGGACTGTGGTGGTCGGCTCCGGGGCATCCTTCCACGCGCGCTTTCCGGTCCCTCTCCAGCCCGAGGAGAGGACAGGGCTGCCGGGCCTCCCGGCCACTACCCGTTGATTTTTTCCACCCCCAGACGAACAGTCTGAGCAGGGCGGACGCAAAACCGGGCTAGTGGCTCCCAAGGGGAAGGCTCACCGCCCATGCCTACCGCCGTTCTGTACCTTCGCTTGTCCCAAGAGACCGAAGTGTCCGACGGGCTCGACCGTCAAGACCGTGACTGTCGCGAGCGCGCCAAGCAGCTCGGCGCGACAGACGTTGTCGTGTTCCGCGAGACCGTGAGCGGATACAAGCGGACCGCGAAGCGTAAAGCGTTCGACGCCATGACCTCCTACGTTCGGGAGCACCGCCCGGAATTCCTTATCGCGTGGAAATTCGACCGCTATAGCCGTAAGGGCATTCGCGACGTTGCTGCGGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93683-94381 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000014.1 Thermobifida halotolerans strain YIM 90462 scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 93683 28 100.0 33 ............................ GGCGATCACCGAGGGCGGGGGCGGAATCCTGTC 93744 28 100.0 33 ............................ TCGAGGATTGTGGATACTCCGCGGAGCGGTCGC 93805 28 100.0 33 ............................ GGGGGACCAGTCCGACCACGGGCCCTCCTCGCC 93866 28 100.0 33 ............................ GCCGAAACCCTCATCACCCACCTCACCGCCGAA 93927 28 100.0 33 ............................ GACCGTCCTGGCCCTCGACCTGGCTCGGCACGC 93988 28 100.0 33 ............................ GGACACCGCCGAGTGGACCGACCGGGGCACCGG 94049 28 100.0 33 ............................ GCGCGCCTGGCCGACGCTGACAGCCGCATCGCC 94110 28 100.0 33 ............................ TTCAGCTTCCTGCTGACTGTGCCGATCGAGATC 94171 28 100.0 33 ............................ GTCCCGACCAACGCCAGCACGGTGTGCTGGTCG 94232 28 100.0 33 ............................ GATGCCGTCCGTGACCTCCCTCAGTTCCCGCCC 94293 28 100.0 33 ............................ TCGTTTCCAAATGGTGGCGGTCGGGGCGCAACC 94354 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 33 CCGAGCCCCACGCACGTGGGGATGGACC # Left flank : TACTCGGGGCGGGGAATGGACGGAGGGACCGTGCGTTTGGGCGAGAGACGCCCGGGAACCAGCGGGGTAGTCATAGAACACGAGTGTAGTCAGCCGCAGATGGGAGGCGTCCGTGAGCGGAGCCCTGGGACGGGACATCCTTCCCGAACCCGAGAACGGGCCGGGACAGTGGTGGTACTCCCTGAAGACCAAGCAGGTGGAGTACGGTCCTGGCAGTCCCGGCAAGGACCGGATGGGCCCCTACCCTGACCGGGCCTCGGCGGAGGCCGCGATGGAGAGGGCGAGGGAGCGCACCGAGCGGTGGGACGAGGAGGACCGCGAGTGGAACGACTGGTGAGAGCGCCCTGAGTGCATCGCCCGGGTACGTGCGGAACGTAGTGGGCGAACCGCCGTGAACAGGGCGCTTCCGTGGAACGGTCTAGAGTGGTCCTGCGGGTGGGAGCTGCTCGCGGGGCGGATAACGCGGAGATAACGAGCCGCAGAACCGCAGGTCAACTTCT # Right flank : CGGGGTTGGTGGTGCCGCTGAACAGGAGCCTGCGGAGTCCCGGGGGTGGCCGGTGCGCTTCCAACGAATCCCCCTGTGGAGGCGCAGGAGTGGGGCGGCGTCCCCACAGGCGGAAAAGGCAGAAGGACGTCGGCCGCCACCGGGAGGGCGCTCCCGTCACCGACCTAGCGGGGGGTCGGAACAGGGCTGAGGCCCCCTCGGGTGCCATGATCATGGTTATGACACAACAGAGTTCTCCGCACGACCTGCCCGACGTGTCCGGACTGTCCGTCGCCGTGCTCGGCGGCACCGGCGACCAGGGCCGCGGCCTGGCCCGGCGGCTCGCGATGGCCGGACACGAGGTCATCCTCGGGTCCCGCAGCGCCGAACGGGCGCAGGCCGCGGCCGACGAACTCGGCGCGGACCTGCCGGTCCGCGGACTGGACAACGCGGCCGCGGCGGCCGCCGGGGACGTGGTCGTCGTCGCGGTTCCCTGGGACGGCCACCGCGCCCTGCTCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 8859-8586 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000013.1 Thermobifida halotolerans strain YIM 90462 scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8858 29 100.0 32 ............................. TCGCTGAGAAACTTCTCGCGGTGACCGGTAGC 8797 29 100.0 32 ............................. CGACCCGACGCCGAGGTCCTGGACGTGGTCAA 8736 29 96.6 32 ...........................T. CACCCGTTCCCGCTGCCCTCCGGCCACTACTT 8675 29 100.0 32 ............................. ACCACAGCCTTGGCCGCCCCTCTCTTTCCCGC 8614 29 89.7 0 ..A........................TC | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCAGCCACCGTGTGAGCCCCACGCACGTGGGGATGGACCTGTTGAGGCTGCTGCGGACACCCCGGAGGTTGGGTGAGCCCCACGCACGTGGGGATGGACCGCACGGGCCGCTGCGCACCCACCCGATCGACGAGTGAGCCCCACGCACGTGGGGATGGACCGCCCATCCCGGTGAGGCGGGGCGGTACGGGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGTCCTGCGG # Right flank : CCAACTGGATCCCGGTGTGCTGACCCGGACGAGCCGGGTCGAGGAGTGGGCGGTGTCGTCCGATTTCCCCCTATCAAGGAGCTGGACGAACGCGCCCAGGCCCGGCACCTGCTGCACGTCCAACGGTGCGCCCCCGGTCCGGCCCCGATCGTGTGCGACAAGGGCTTCGCCGGAGCCAAGATCGAGAACGCGGCCGCTGGCCTGGGCCATCCGCTCATCCGCCCGGTGCGCGCAGACGAGCCCGAACCCGAAGTGAAGGTGTTTCCGTCCTGGCTGCGCCAGCGGATCGAGGCGATCATCTGGACGCTGAAGAACCAGCTCAGGTTGGAACGCCACAACGCGCGCACCACCGAGGGACTGTGGGCCAGGGTGTGTCAGAGGATCTGCGCGCTCAGCGCCGTCACCTGGCACAACTGGCTGATCGGTGCCCCCCGTCAAACGCTCCCTGACCGCCTACGACCACTGACCAACACACCCACAACCCCCATCAACGATCTAGA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 10337-9636 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000013.1 Thermobifida halotolerans strain YIM 90462 scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10336 29 100.0 32 ............................. CGTCCCACGTCCACGTGTAGTCGGCGGGCTCG 10275 29 100.0 32 ............................. GATCGGCCGTTCCGGATCAATGTCAACAGTGA 10214 29 100.0 32 ............................. GACGGTGCGTTGCGTAAGCACACCGTGGACGG 10153 29 100.0 32 ............................. CGTCCCCGGTAGAGGGGCCGGCCTTTGCGGTC 10092 29 100.0 32 ............................. GACTCGGTGGTGGCCGCGCACATCGCGTTGCA 10031 29 100.0 32 ............................. GCTGATGACGACTACGCCGCCCAGATCGCTGG 9970 29 100.0 32 ............................. GACTCAGTCCGGCCGCGTAGGGGGTGGCGCGG 9909 29 100.0 32 ............................. CGAAATGGACATGATGGAGTGGCGCATCATCG 9848 29 100.0 32 ............................. GCACCGCCATGCCACGTCCGAAGACCAACTGG 9787 29 100.0 33 ............................. CTGGCGAAGGTGGCCTGGGGCGCCAGCCACCGC 9725 29 100.0 32 ............................. TCGCCACTAGAAATAGCCGCCACCTGGGCAGC 9664 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TGCGCGACCGGCTCGCCGCGGGCGACGTGCGCGCGGCCCTGGCCGCCTACCGGGGCGAGCTGCTGGGCCGCTCGGAGGCGCCCGGCGTCCGCACGGTGCGCGACGAGGTCGCGGCCACCCTGCGCACCAGTGTCCTGGAACTCNCGGCCCCCCCCCCTGCCGCGACCTGGGCCGGGAGGACGCACAGGTGCTGGAGGCCCTGGTCGCGTCCCTGCCCCGCACCTCCCCGCGCCGGGCCAGCGCGCTCGAACGGCTCCGCGCCCTGCTGGCGTCCGACGGTTAGGACGAGGCCACTCCGGGAAACAGAGAGCGGTCCGGACGTCCGCCCCCACTCCCCCACTGGTCACGGCGTCGTCCCGGTACGCGCGGAACGTAGCGGGCGAGCCCGCCGTGAGCGGGACGTTTCCGCAAAGCTGGTCTAGAGTGGTCCTGTGGGTGGAGGCCACTCGCGGGGTGGATAACGCGGAGATAACGCTCCACAAAACCGCAGGTCAACTTCT # Right flank : TCGGCGGTGATGGGCATCGTCAACGGGATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCAGCCACCGTGTGAGCCCCACGCACGTGGGGATGGACCTGTTGAGGCTGCTGCGGACACCCCGGAGGTTGGGTGAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 29610-30013 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000015.1 Thermobifida halotolerans strain YIM 90462 scaffold15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 29610 37 100.0 35 ..................................... ATAGGGGTGGTTCCCCGGATATTTTGGGCAGAACT 29682 37 100.0 35 ..................................... TCTTGCTCAATGGTTATCCCTGCTCTGGTTTGTCC 29754 37 100.0 39 ..................................... CCCCATGATGGCGGCCGGGACGCCCCGGAAGGCGCCCCT 29830 37 100.0 34 ..................................... AGCCCAGCTGGACTGAGACCACTCCGAGGACGGC 29901 37 100.0 37 ..................................... GTGAAGAGCATCGCCTGGGTCATGTCCCTGGCCGCCA 29975 37 97.3 0 ..................................C.. | C,G [30006,30010] ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 99.5 36 GGTCCAAAGGACGTCAAAGCCCGAAGGGCATAGAAAC # Left flank : GGTGAACGCACGTGGGCCGCCATCCCCATCGCCGCCGCTTCTACCTGATCTGCTATGACATCGCCGACAACGAACGCCGCGACGACGTGTCCGAACTGCTGTCCGGCTACGGGCCGCGCGTGCAGTACAGCGTGTTCGAGGCGGCCGTGGAGACTCCGCACGTCTTCGACCAGCTTCAGCAGAGACTCACCGACCTCGTCGACCCCGACGAGGACCAGGTGCGCATCTACCCGCTGCGAGTCACCGACCTTGACAAGATCACCATCATCGGCAACCGTCGCCTTGAGGAACGCGACGACTTCTGGATCATCTGAGGGGAGGTGTACACGATTTGGAGGAAAGCCCGTAGAACCCTGGTTTCTGCGCACCGTATCACCGCAGGTAACAGCCATAGAATCAAGAAAAGAGACCTGGATCACTTGCTCTTGGAAGTGCGGGGACTTGATCACGCGTAAACGGACATCGTCAGCGCAGGTCAGCCCGACCGAAAACCAGGCAGG # Right flank : CTGTCGGAAGTTCTCGATATCAGCCTGTTTTCCAGGACCGGTTTGTTCCGTCCGATAAATGAGGGCTGCCGTTAATCTCCAGGCGCTGTTGTCCGCTCGTGAGTCAGTACGCGGTACGCAGCCGTCGCGGTATGCCGCTGAAGCGGACTGTTCGCAGGCCGTGACAGTTCGGTAGTGCGTTCGAGGGCTGTCGCGGGGCGCCGTCCGAGGTGGCCGTCACCGGGAAGAACCGGCCCTGGGACGGTGGGGTCTGGGTGCGGCGTGCGCCGCCCCCGGGTCACAGGTCCAGGTCGATGTCGTCGGCGCTGGTGGCCGCGTTGCGTTCGGGGTCGGTGAGTTCGGTGGCGGTGAGGGTCAGCGTGTAGTGGCGGCGCGGGTCGAAGTCGGGGAACTCGTCGACGCGGTCGAGGATGTCGGCGACGAGTTTGCGCAGGAACAGCCGGGGCGCCACACCCACCTTGCCGCCGAGGCCGCCGGTGACGGCGGTGGCGAGTTCCGCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCAAAGGACGTCAAAGCCCGAAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 83949-85750 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000006.1 Thermobifida halotolerans strain YIM 90462 scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83949 29 100.0 32 ............................. GCCTCGGGCACGTAGATCAGCCGCCCCTCCAG 84010 29 100.0 32 ............................. GCTGGTGTGCAGATCTCCCACGGGATCGCCGA 84071 29 100.0 32 ............................. ACCCTCCAGGCATGAGAAAGGCCCGCACGCTG 84132 29 100.0 32 ............................. GTGGGCGATCTGCTGGGCGTGGTCGTCCGTTC 84193 29 100.0 32 ............................. CCGCGATCGCGGAGGTCGAGTCCAGGTACAAG 84254 29 100.0 32 ............................. AGGAGCCGGAGGAGTCCGAGGCGGACCTGGTC 84315 29 100.0 32 ............................. GCGTTGAGTCTGGGGGACGCCTACCTGTTCGT 84376 29 100.0 32 ............................. ATCCTGGTCGTGCGGAACGGGTCCGCGTCGTC 84437 29 100.0 32 ............................. CTGGTCGACGACTCGGTGGAGGAGATCCGCCG 84498 29 100.0 32 ............................. CAGTTGGGCGCCGTATCGGAACCCGTCGCCGC 84559 29 100.0 32 ............................. CGTCAGGGTTCGCCCTCAGGCTGTTGGGGGTG 84620 29 100.0 32 ............................. CGTCGATGATCTTCTGCTGTTCGTCGGTGGGC 84681 29 100.0 32 ............................. GCAACGACTCCACGGCCGAACCAGTCGTACCC 84742 29 100.0 32 ............................. GTGATGTCCCCGGTTGGGGATTTGAGGAGGTG 84803 29 100.0 32 ............................. TGGAAGCGAACCGTGCCCAGTACGAGCAGTGG 84864 29 100.0 32 ............................. TACGAGGAGGTGGTTGGGGATTTGAGGAGGTG 84925 29 100.0 32 ............................. GTGATGTCCCCGGTTGGGGATTTGAGGAGGTG 84986 29 100.0 32 ............................. GTGATGTCCCCGGTTGGGGATTTGAGGAGGTG 85047 29 100.0 32 ............................. GTGATGTCCCCGGTTGGGGATTTGAGGAGGTG 85108 29 100.0 32 ............................. GTGATGTCCCCGGTTGGGGATTTGAGGAGGTG 85169 29 100.0 32 ............................. GTGATGTCCCCGGTTGGGGATTTGAGGAGGTG 85230 29 100.0 32 ............................. GTGATGTCCCCGGTTGGGGATTTGAGGAGGTG 85291 29 100.0 33 ............................. TACGAGGAGGTCCCGGTTCCCGAGTGGGGTGGC 85353 29 100.0 33 ............................. TACGAGGAGGTCCCGGTTCCCGAGTGGGGTGGC 85415 29 100.0 32 ............................. ACCTGCCGTTCCGGATCGCGCAGGAGGCATAC 85476 29 100.0 33 ............................. TACGAGGAGGTGCCGGTTCCCGAGTGGGGTGGC 85538 29 100.0 33 ............................. TACGAGGAGGTGCCGGTTCCCGAGTGGGGTGGC 85600 29 100.0 32 ............................. GAGTGGGGGGCTGCCACCACGGCACTCCCTGG 85661 29 100.0 32 ............................. CCGACCCACTCCCGGGGGCCGAGCCAGACTTC 85722 29 93.1 0 ......................C.A.... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.8 32 CCGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GCTCGCCGCTGAGTTCCTCTCCGGGATAGGCGGACAGGTCCACATCGGTCTGCTCCTGGAACTCGCGGGTCAACTTCCCGACATCGTGCATCCCCGCCCAGAATGCGACACAGCGCCCTGCCTGCTCCTCGTCCACTTCCATGGCCGAGGCGATCGTCTCCCGCAGACCGGGAGAAAGGTACTCACGCCACAGCACCAGAGCCGCCGCGGCGGCGTCGAGGGAATGGCACACGAGCGGGTAGACCTGCCCTCTGAGCCCGCGTTCTTTGGCCCAGAATCCGAGGTCGACGAGCGAAGTGTTCCTCTCCCCGCTTGCAGGGCCGTACTCAGGCACGTTTCCTCCCACAGTCCGCCATCCCGGTATGCGCAGAACGTAGTGGGCGGCCGACCGCGAGCGGGACGCTTTCACGAAATTGGCCTAGAATCGCCCTACGGGAGGAGACCGCCCGCAAGCTTGATAACGCGGAGATAACGCTCCGCAAAACCGCAGGTCATCTTCT # Right flank : GCTGGTCCAGTCGGTCTATCCGCACCGGGAGCACCGAGCCCCACACGCAGAGACCGATCCGCGCCCTCTGCGCTCCCCGCTGTTGAGCACGACGGAAACGTCAACGGTCTTCGACCGTGGCGGCCCGGTCGGCGGCCACCGGGCTGGGGCGCCACAGTCCCGCCGCAGCCAGGGCGCACATCCCCGTGAGCGTTCCGGCGCCGCCCAGCAGCAGGATCGGGTCCAGGTTCCCGGCCCACCCGGCCAGGGGGTAGGTGAGCAGGAAACAGGCATGGGAGAGCGCGAACTGGGCGGCGAAGACCCCGGCCAGAGCGCCCTCGGGGGCGGCCTCGCGCAGCAGTCGCCCGGTGGGCGCGGACACCAGCGCACACCCCGCGCCCAGCACCGCCCACCCCGCGCCCAGCACCGCCCAGCCCGCGCCGAGCACGGCCGGTCCCGGGGCAAGGGTCCAGCCCAGAACGGTGGCCGCCGCTCCCGCGGTGGCCACGGCGGGGGCGGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 6122-6760 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000017.1 Thermobifida halotolerans strain YIM 90462 scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6122 29 100.0 32 ............................. ACCGCCCGCACCGGCCCCGGGGTCGGCGCCTA 6183 29 100.0 32 ............................. TCCGTGCTGGTGCTGACGTTGACGGTGACGAA 6244 29 100.0 32 ............................. ATGTAGGTGGCGCCCTTACCGCTGGCGACCAG 6305 29 100.0 32 ............................. GTGCGCGGCAAGATGAGCGACATCGCCGGAAC 6366 29 100.0 32 ............................. CCCACCACCGACACCCCCGACCGCGACACCGC 6427 29 100.0 32 ............................. CTTTGGCGAGCTTGAGGCGCTTGAACCGCTTG 6488 29 89.7 32 ............TG..............A GGATGGAACGCCACCATACGGGTCGCGGTCAC 6549 29 100.0 32 ............................. ATGTCCTTCGCCGCAGCCTCAGCAGTGCGCCG 6610 29 100.0 32 ............................. CGGACGGCTGGACGTGGGGACCCCGCAAGGAC 6671 29 100.0 32 ............................. CGCCACACGCCCGCCCGTATGAGGACATCACC 6732 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GCCGGCGCCGAGGAGGAGCCGACGGGGTCGGGGGGTCCGTGGCGGGTCGTCGACCTGTGGGATCCGGTGGCCGGAGCCGTCGCCGGGGGCGTGAACTACGCGGACCGCGCCGCGGACGGCGAGGAGTCCTGATGGCCAGGCTCGTGGTGATCGCGACGACAGCCGTTCCCGACCACGTGCGGGGCGCGCTGTCCCGGTGGATGCTCGAACCGGTCGCGGGCGTGTACGTGGGCACGATGAGCGCCCGTGTCCGGGACGAGCTGTGGTCGGCGGTGAGCGCGTCGGTCGGCGACGGAGCCGCCGTGTGCGTCCATCCTGACGACAACGAGCAGGGCTTCAGCATGCGCACGGCGGGGGAACGCCGCCGGACAACCATCGATTTCGACGGACTCCAACTGGTCCGACTGTCAGCTCTGGAGGAGCCGGAACAGCAGATGCCACTGATCCCGGAGGGGTGGTAACGCGGAGATAACGTCCCACAAAAACGCAGGTCATCAACT # Right flank : GGACTACAGGAATGCGGGGCGACCCGGAGCCGGGTACGAGTCGGCGGGTCTGTTGGGCCGTTGAAGACGGTCAGGGCTGGCGGGACGGTGAATGCGGCCGGGGTCGTCAACGTTGGTGGGGGTCGCGGTCAGCCTCCGTGTGCCGTGATGGCGTAGCCCTCGGGGCCGGTGAAGGTGAACGTGCGACCGAAGGGACTGTCCCGCGGCGGGCTGATGATGGGCACCCCGGCGGTGGCGAGTCGGTCGTGCAGTTCCTGGGCGTCCGTGGTGCGGAACCACAGGGCCACCCCGAGGCCGGGCCGCGCGGCGCCGTCGAGGTCCACTCCGGGCAGCGGTTCGCGGACGGCGAACGGGATCGGCTCGGTGGCGAACACCACCGCGTCGGGAGGCGAGGCGGGCGCCCTCCGCAGTCCGAGGTGCTGTTCGCAGAAGGCGGCCGCTGCTTCGACATCGCGCACCTGGAGCGCGACGAAGTCAGGGCCGTCGACGGTGGCCGTCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 188937-190124 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000007.1 Thermobifida halotolerans strain YIM 90462 scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188937 29 96.6 32 ............................A CACCAGGTCACCCGGCGCATGCTGCCCCTTGG 188998 29 100.0 32 ............................. CCAGCTAGCAGCAAGCAGACGGCTTTTATCGT 189059 29 96.6 32 ............................T GCCTGCCATACGTAGCGGACCCCGGAGGCGAG 189120 29 100.0 32 ............................. ATCTCCGACTCTGTGGACTCTCGCCCCTGCCT 189181 29 100.0 32 ............................. GAATTGTTGTGGACATCCGTCCCAGCAGGGTG 189242 29 100.0 32 ............................. TCGGCGCCGGTCATGGTGACGTACCAGGCGAG 189303 29 100.0 32 ............................. GTGGCGGATCACTCGGTTGATGCGGCTCGGTG 189364 29 100.0 32 ............................. GGGTGACGGGTCGCCGCCAGGGTGGCGGGTCG 189425 29 100.0 32 ............................. ACGAAGCAGTTCCCTGTGATCGCGCTGGAGCT 189486 29 100.0 32 ............................. GCGGCTCGCCTTCCGGGGACGTGACCCGCCGC 189547 29 100.0 32 ............................. AACCCGCCCCACATGGAGTCCTTGTCGTAGAG 189608 29 100.0 32 ............................. GGGGCTAGGGCGCGGGCGGCCATGCTGGCGGA 189669 29 100.0 32 ............................. CCTTCAGGTTGTGCCGCTTGTGGTGGCGCGCG 189730 29 100.0 32 ............................. CCCGGCGACCATGTGACCACCGAGCGCCAACT 189791 29 100.0 32 ............................. TTTGACGACGGTTTCGCGTTCAAAGACTGGTC 189852 29 100.0 32 ............................. CTGTGCCAAACTGTGGGTTGCACTGTGTACCT 189913 29 100.0 32 ............................. AACCGCGGACACCTCCCACAAGCCCGCGACCG 189974 29 100.0 32 ............................. CGCGCCACGTCCACACCGATCGTCAGCGGTCC 190035 29 100.0 32 ............................. TCCGGCAGCCAGGTGCGCACGAGCTGGCCGTC 190096 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CTACGAGTGGCTGCTCGCCTTCGAGGCCGAGCAATTGCACCGTATCGTCGACCTGATGCGTGAGTTGCGTGGTGCGGAGGCCCGTTGTCACACCCGTCTGGAGGTTCCGTTCTACACCGGTAGGCGCAAGAGCGTGGCGGAGTTGGTCGAGTCGCTGCCCTAGGGGTTGGTGTCGAAGTGGTCGGGTCCGTGTCGGTGTGGCGGTCGGGGTGATCGTGGTCGCTGTGGCGGGTCCCGGGAGGTTTGCTGGGTCGTGGTTGTCCCGGCCGTGTGACCGGTGTGGGTCTGACCGCTTTCGGTGCATGCTCCGGGGTGGGGATGTGTCGTGAGGTGGGGAGTGGTCAGGGGTTCGCGTTCGCTTCCTCGATCGGTCACGGCCGTCGCTCTGGTACGCACGGGGTGCTTGCGTGGAATTGGTCTAGAATGCTCCTGCGGTTGGAGTTTGCTCGCGGGGCGGATAACGCGGAGATAACGCCCCGCAAAACCGCAGGTCAGCTTCT # Right flank : GAGGCAGAGCAGACCAGCCTGGATTTCGACGCCTTCGAGGAGGAGACCGCTGATGAACGAGTACGCCCGGATCATCGAGGAGACCTGGCGCAGGGTACGGCCGGGCGAGATCGAGCAGATGTCCGACCCGGAGGCCTACCTGACCCGATTGGGGGAGGATGTCGAGGAGGAGATCACCGAACGGTGGCCCAGGCTGGCGGGCCCGGATCCGGAGCAGGAGACGCATCTGGAGAAGGTGGCGCGGCTGAACTGGGCACGCCAGCAGGCAGCCTCCCAGGTGGTGAGGGAGAAGCTGGAGGAACTGTTCGGCTCGGCAGTGGAAGAGGACTGGGAGAGCGAGGAGGACGAACCGGAGGCCGAGGAGAAGCTGACAGCACCGAGCAGCAGCCAGATGGAGGACAGCCGCGACTGGCTGGCCCGGGAGTTGGGGATGGGTCCCAGAGCCTGAGTAGGCCGCGGTTTCGCCCCACCGGACAGCACGCCTTGGCCCCCGAGGGGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 191217-191366 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIZN01000007.1 Thermobifida halotolerans strain YIM 90462 scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 191217 28 100.0 33 ............................ TTGTTCACCGCCTCCGGGTCCTCCGGGAGGAGG 191278 28 100.0 33 ............................ ATTCAGAGCTGCGCAGGGGAGGCGGGTGCCCCA 191339 28 92.9 0 ........................T..C | ========== ====== ====== ====== ============================ ================================= ================== 3 28 97.6 34 TGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CTTGGCCCGCTGGTCGGGCTGGGGAGCAGTCCCCCAGGTCTTCGACCCCCGCAACGAGGAGTTCGTGGCCGAACGCGCCGAGCTGCGTTCCCTGCTGAGCGTGGCCGACTACGCGGCTGCGCGCCGCACCACCCTCAACGCCCACTACACCGACGCCTCACTGGTGCAGGCGATGTGGCAGGGCCTGCGCGAACTCGGCTTCGCGGGCGGCAACGTCTTGGAGCCGGGCTGCGGATCGGGCAACTTCATCGGGTTTGCTCCGCAAGACACCCCGGTGTCGGTGCACATGGTGGGGGTGGAGCTGGACGCCACCACCGAGGCCATCGCCTTCTACCTGTACCCCGACGCCCAGGTGCTGCACGAGTCCTTCGGAGACACCTTCATCCCCGAAGGGGAGTTCGACGCGGCCGTGGGCAACGTGCCCTTCGGCAACTACCGGATCTACGATCCGGAGTACAACCGTGAAGGCCTCAGCATCCACAACCACTTCATCAGCAAGG # Right flank : CTCGAGCCCCGGGAGTCCCTGGCTGTCAACAGCCGTGGAACTCCTGGTAGGACTGTTCTCACCACAAGACCGCGTCCACTGCGCCAGAGGCTTCACGGTGGTTCCCTGTTCTGCCGTGCTCGGCCACCTGGCCCGCCTGTTGGCCGCCCACCGCCGCACCATCGGTACTCCGCGCTGTTCCCAGGCACTGACTTCGTTCCGCCAGGCGGTCTTGGTCCTGCGCCACTTCCACGACGGCAGCCGCATCCACACTTCGGCCCGCGGCCACGCCGCCAATCCGGCCACCGCCTGTCGCTATGTGCGCGAAGGCATCCACGTGCTCGCCGCCCAGGTCCCGACTCGCACCAGGCCCTGGATGAGCTGCGCGAGCTGGGCGAGTTCCTGGTCGTTGTGGACGGCAGGGTCTTTGCCCCCACCCGGTGTGCGGAACAGAGTGAGCGCGGCGCGGACGGGCACTCGGCGCACAGGCACCGTCACGGTGCGGGCCTTCGACGCCGACG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //