Array 1 136004-133988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPFU01000002.1 Streptococcus mitis strain SK629 gsmSK629.contig.1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 136003 36 100.0 30 .................................... AGCGGCAGAAATCGCTCAATCAGTTGCAGC 135937 36 100.0 30 .................................... AACATCTAAAGGTTATGCAGAGGCAGAGGT 135871 36 100.0 30 .................................... CTTTGAGTTATCGTCATCGTATCAATCGCA 135805 36 100.0 30 .................................... AGAACATACCAGAAACGTTTTTCCTATCAG 135739 36 100.0 30 .................................... GTGTAAAGAGGTTTTTTAGGTTGATTTGAC 135673 36 100.0 30 .................................... ATTTTGTTCTTCAAAAGAGAATGGAACATA 135607 36 100.0 30 .................................... CAAATAAAAACCAGCTAACTCGTAACAAGC 135541 36 100.0 30 .................................... AAAAGAATCAGATATCGTGTTATGTCTTGT 135475 36 100.0 30 .................................... TGTTTCTTTTACAATTACAGATCAAGACGC 135409 36 100.0 30 .................................... TAAGGTGTATTATAGTCTTCCGTATAATAT 135343 36 100.0 30 .................................... CACGTAATGCTTGTGATGCAATAACAAGTT 135277 36 100.0 30 .................................... GTTCCGACTCTATGTCAATATGGTTTGTAA 135211 36 100.0 30 .................................... AATCTTCCTAACTCGTTTATGTAGGCAGTT 135145 36 100.0 30 .................................... GAGCAGAAATCAAAGGCAGAGTCGTTCACA 135079 36 100.0 30 .................................... TGGAGAGTTGCTGGTCTTGTTTGATAAGTT 135013 36 100.0 30 .................................... GTGTGTACGCACATTGTAAACAAGCATTTA 134947 36 100.0 30 .................................... TAAGGTGTATTATAGTCTTCCGTATAATAT 134881 36 100.0 30 .................................... CACGTAATGCTTGTGATGCAATAACAAGTT 134815 36 100.0 30 .................................... GTTCCGACTCTATGTCAATATGGTTTGTAA 134749 36 100.0 30 .................................... AATCTTCCTAACTCGTTTATGTAGGCAGTT 134683 36 100.0 30 .................................... GAGCAGAAATCAAAGGCAGAGTCGTTCACA 134617 36 100.0 30 .................................... TTGATGATCCGGCTGAACAATTGCAGAAAC 134551 36 100.0 30 .................................... TCTGCTCTGTTTCATCCAGTCTTTGACGAA 134485 36 100.0 30 .................................... CAGAGAAGATTATGGCACGAGCCTTGCTGA 134419 36 100.0 30 .................................... AAAATTTCTAATTTAGGACTTTGGTTTGAA 134353 36 100.0 30 .................................... GAATTAATCCGGTCGAATTGAGTGAAATGG 134287 36 100.0 30 .................................... ATGGAAGAAGAGGGTAACTGTCACGAACTC 134221 36 100.0 30 .................................... CCTTGAAAAAATCATTAAGGTAGTCAGCTC 134155 36 100.0 30 .................................... TGCTAAGGACAGGACGCTGGCTATCCGTGT 134089 36 91.7 30 .............A.......A.........T.... AGAAATTCTTTTAATCAAAAGCACTCGAAA 134023 36 88.9 0 ................A.........A..T....G. | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.4 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGACAAGCCCGAAGTCAAATCCATGATTGAAAAGCTGGTTGCTACGATTACAGAATTGCTAGCATTTGAGTGTTTAGAAAACGAGTTAGACCTAGAGTATGATGAAATTACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACCCTGAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCCGCCTATCTATCAAAGGATGAGTTAGTAAATTTGATAGAGTATATCCAACTCAATCAACTGTCCGTCTTGTTTATTGAGCCTCGGCAAATCTATGATTTTCCGCAGTATGTATTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : ACATTAAAAGCTACTCATTTTTTAAGTAGCTTTTTTCTTATTCAAGTTTACATATTAGTCGTCACAACCCCATTCCCTTGTAGAGAAGCAATACTGAGAGTCCTACGAATAACACTACCGCTACCAGTCTCTGACTAGCGCTATACATCCGTCTTTCGCCTCTAACTGGAAAGATAACTGCTAGAAATGCTCCACCAACTGCACCTCCGATATGGCCAGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATAATGTTAATCACAAAAAGTGTCAAATAAGACTGTCCTAGCTGTTGGATATAAGGATTGCGCGTAGCATAGCGAAGAATGATAATCGCGGCAAAAAGACCATAAAGAGAGGTGGATGCACCTGCCGCTATGGATTTAGGACTAAACTCAAAAACAAAGAGATTGCCCATCATTCCTGATAAAAGATATAGAAAGAAAAACTGCTTGGATCCGAAAATCTCCTCTACCTGCCTTCCAAGATAATAAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //