Array 1 10919-9752 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMT01000046.1 Photobacterium phosphoreum strain FS-4.1 CFSAN065486_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10918 28 100.0 32 ............................ GTTGTGGCATCCATTCGATGAAGATTAACCCC 10858 28 100.0 32 ............................ CAAATTAAAACCCTTACCTCTCCACCTTTTAT 10798 28 100.0 32 ............................ TAAATAGCATTAACCAGTTAAACATGGACGAG 10738 28 100.0 32 ............................ AATACCGATCATGCCGCACATAGCGCGACCAC 10678 28 100.0 32 ............................ GTTAGGCATTGAGATAGCCCACGTAAACACCT 10618 28 100.0 32 ............................ TTAAAATCAGCGTGATACTGAGTAATTGTTGC 10558 28 100.0 32 ............................ TCGCCAAGTGGTAGCGTGTAATTAGATGGTTT 10498 28 100.0 32 ............................ TACTGATAAATGACGATATTTATAGATAGATC 10438 28 100.0 32 ............................ TGACCGCGTGATTTTAACCACGCCTTCATGTC 10378 28 100.0 32 ............................ CTGCACAGATGCATTCCCAGCACCAGAACACC 10318 28 100.0 32 ............................ AAGAGATAGCACTTCATCGATATTGTCTTTGA 10258 28 100.0 32 ............................ TGTACGAAAGATGCCGCTAAATCAATGCCGTC 10198 28 100.0 32 ............................ GGTATCATCTAACGTCAATACGCGAAAACTAA 10138 28 96.4 32 .....T...................... TGATGATTTTGTAGCTATTACAGCATAGTAAC 10078 28 100.0 32 ............................ AACACCAAAACCAAGTGCAGCAAGACCGATAA 10018 28 100.0 32 ............................ CATCGAACACCGCTTGATCTTGTGCGAAGAAG 9958 28 100.0 32 ............................ AATCCCAAAACACTTCATCACGCGCAACATTC 9898 28 100.0 32 ............................ CTGAAAAGACCAAATTCAAAATAGACGTTAAT 9838 28 100.0 32 ............................ TGTCACCCATCTCGCAAACACTGGCAATAGAT 9778 27 82.1 0 ...........T........T..T-..T | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTACTTCATTAGCTGAAAATAAGGGTGTTCCGCCACCACCACAAAAACCCACCAGCACCCCTGCTTTAGCTAATTCGCGCATTGCAGCTTGAGTGATCGATGTGCCTGTTCCGAGCATTATGGCGGTCGTGTTTGCTATAGGGATATTCCAATATAACGATTGCTTACCTTCGTCGGTGACATATTCAACCCGTCCACCATTCACTAACACACGACAATGTTGTAAATAATAAAGATTGGCACGTTTTGAATGAATAATGGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCGGTCACCAACAGTAAAAAACGCATTATATACATAGATACACATAATGCGTTTAGAGTGTAATCACAAATACCCTTTTTATTTGGTAACTATTCAGGCTATATAAAACAACAACTTAAAACATCAGTTAAAAAAAGGGTTTTTGGTGGGAATTTACTGTTTGGCTTTTATAAGCAATCACTTATACTAACTTTGCTCCA # Right flank : TACTTGCAGCAGCCATGGCTTCTTTGATTTCATCTGAACCATAACCTTTTGATGAAAGATAGGCATAGGCTTTACTTTTATCTTTAAAATTCGACAAATCAAACCGCTTTTTAGCTAATACTAATTGGCAATTTTCATAAAAATCGACCTCCCCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGGTTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTAATCACTGTTTTGCCTTTGAGCTTACGGACTAACTTCAATACTTCTGTTTCAAGATCAGCATTCATGCCTTTGATTTTTGCTTTGGTTAATAGCGTATCGGCAGCATCATGTTCCGCAATCGCTCTTGAAATATCTTGAAAACTGTATCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAACTAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 19466-19853 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMT01000046.1 Photobacterium phosphoreum strain FS-4.1 CFSAN065486_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19466 28 100.0 32 ............................ TTTGTTATTAAATAGAGATATAGTTTTCATAT 19526 28 100.0 32 ............................ GACCCGCGATCTGAAATAAGCACATGACCATC 19586 28 100.0 32 ............................ GTCAAACCTAACGTTAGGCGATAAGTCAGCAT 19646 28 100.0 32 ............................ TGAGAAATTCAATTAGACGTTCCTTAGAAGGG 19706 28 100.0 32 ............................ CATACCAATATCCCAAGCGGTATTAACGGGAG 19766 28 100.0 32 ............................ GGTGAAATTGAACGTGAGTTTATACGTCAACG 19826 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACCCGTGTTACGACTATTACGGCAATTCCGAGTGACATCAAAGGTTATCAAACCGTCAAGCGTGTGCAGACCAAAAGTGCCAATAATAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCTGATGAAGCGATCCATGCCATTCCTGATACAGCAGAGCGTAAGTTAACGTTACCTTATGTTCAAATACAGAGTTTATCTAATCAGAATGTTATGCGGGTATTTATTGAGCATAGCAAGGTGGTGAGTGATGCAACGGATGGTGTATTTAGTAGTTATGGATTAAGTGCCACCGCAACGATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTATTCATTTAACCCTTTTTTTTAGCCTTTATTCGTTGCATTTAAAATCAATGAGTTATAAGTGATGAATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAACTAAACAATCGCTTATTATAGTTTAGCTTCA # Right flank : ATAACTAAAGTACACCGCGAACGTATTCTGCTTATTCACTGCCATATAGGTAGACATATGCGTTAGCCGCATGTTTATTCCATCTGACAAACACAATACATTTCGCTAATAAACCATATTATTCATATTGTTAATAACTGTTTTCTAAATCGTTGTAGGTTGGGGCAGCGATGTTTACTATGTGCTACAAAGGATTTGTTGTTCGGTAAAATAAATGAAGAAAGATAAATACAATAATATTGCGGATCATATTTTTAAAGTAGATGCAGTAAAAATAGCGGTTTATGAGGTTATTACGCATAAGATGACAGCGTACAGAGCTGAGATTGTGTATGGCGTCACACCGAATACGTTGAATCGTTACGTTAAAAAATTCAATGCCGAGTTAACTTATTTACAAGCTTTAGGTTTAAAAGAAAAATAAATTATGTAAAGTCCAGTACCTACTGGACTTTACATCAGTGTGATAATGCTGCTTCATTATTCTCTCGTTCAAATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //