Array 1 7463-7694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBBT010000009.1 Loigolactobacillus coryniformis subsp. torquens strain 42L Contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 7463 35 100.0 30 ................................... CTCAATCTGGCCCAGCAATTGAAGTCTGAA 7528 35 100.0 31 ................................... CACACTTGATAAGGATTGTGTCGTGATTAAA 7594 35 100.0 31 ................................... CTGGATCCAGGTGTAGTTGCCGATCTTAGCC 7660 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 4 35 100.0 31 GATCTGTTTTAGCTGAAAACTGAAGGAATCAATAG # Left flank : AGCAATGGGTCACATTTTTGATCGTCATAGAATATATTCCTTTCTTATTGGTATATCAAATGTTGATAGTATTTGCTTAAGGTGCCTATGTATCAATGAATTAATCATATAGGCCAATATGATAATTAGTGCAAGCGATATACCTTTATATTGGATAAAACTGATTTGAAGTCCTTTATGCTTGTTTATGTTCACACTTGATTAAACGTAAATAAATTTCAGAACTATATTTTATAGTTGAGCAATTATCAAAGAAATTGGAAATGCGAAGTGTAGGATTAGTTATATAATCTCATTATTTATGTGAATGGCAATTAAAATAGATGTCCTTAAATGTACCAGAAATATTTTATCTGAATATGTAATTTAGTACCACTAACTGTGATTTTTGGGTGTTTTAGTCCGAATTAAGTTGATGAGTAAGATTAAACGGTTGGTTACTTTTTGGACATAGAAAATAGTCCAGTATCCGTGTGATATCGGACTATCACGGTGTAATT # Right flank : GTAATTGGATCCTAGTTTACTAGGATGCCAGTAAAGCACTAACCCCAGTGGGATTTATCCTGCTGGGGTTATCTTTATGCCTGCACACAAAAAAACGCCGCTAACGGCGTTTTTGCTTCTCCGTTTCTGGTTGTGCAACCAGCCGCCGGAACCCCCAATACCCGACCAGCACCAGAATCAGCAGATTGATCCCTAAATTGGTGTTCTGCAACAGCCGCGCACCGCCGTAGTTAAGTAGTCGAATCACAGTGACGACGCAATTACCAGCCAGCAACCACTTCGTCGCCGTCAGTAGCCGCTGCTCGCGCAGATCGTGCACCGGCACATAATCCAAAATAAAGACGATTCCGATTTGTATCAATAAGACTAACCAAACTTCCATAGCGCACACCTCGCTCAGGTCTTTATATTAATTATAGCGCTTACACAAAGTGTGAAGCAATCTTTTTCCAGGCAAAGTTGTTTACCGCCGCTGGTTTCCTGTTATGATAGAGGTAATG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTGTTTTAGCTGAAAACTGAAGGAATCAATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 3171-331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBBT010000105.1 Loigolactobacillus coryniformis subsp. torquens strain 42L Contig_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 3170 28 100.0 33 ............................ TTGATGACACTGAGTTGACATACAGCGGTGCTG 3109 28 100.0 33 ............................ CTTTGCTGTTAATGGTGGTTTTATTGTGCATAA 3048 28 100.0 33 ............................ TAGACGTGTCTTGGCTTGTGCTTGCAAGTTCAG 2987 28 100.0 33 ............................ TATATGAGCAATCAGGAACGCATTCAAACAATT 2926 28 100.0 33 ............................ TGATACGTTCTGACTGATACTTCATGACGCCAA 2865 28 100.0 33 ............................ TATTGATGAAAATGGCATCGTACGTTTCCGCGA 2804 28 100.0 33 ............................ CTGTGCGGTCAATTGGGTGTCAATACCTTTTAT 2743 28 100.0 33 ............................ CATGATCTTTCGTCAATCAGCACCACCAAAATT 2682 28 100.0 34 ............................ TAAACGATCATGCCTTTTTTGTCACACAAACAGA 2620 28 100.0 33 ............................ TAGCTGCCGAGTTCCTTAAACACGGTGTTAAGG 2559 28 100.0 35 ............................ CCTTCCCAGTATTAAAGCCAGAGGAATACCAGCCA 2496 28 100.0 34 ............................ CTGACCGGGTACTTAAGATTATGCCTGACGGAAG 2434 28 100.0 33 ............................ TAGGCCAAACGCAATCAAACCACCGCCGGCTAA 2373 28 100.0 33 ............................ CGCCACGGCGTCAATCGTCGAACAATTCGGCCT 2312 28 100.0 33 ............................ CTCGGGTTTTATTTCGAGCGCAGCAATCTATCA 2251 28 100.0 33 ............................ CGGGGCTTAGATAAAGCAGACAGTAGCAAGCAG 2190 28 100.0 33 ............................ AAGCAGATGGCCGGTAAAGGCGTTACGGTTAAA 2129 28 100.0 34 ............................ TGTTCCCCGATTGGGGTTTTCAGGTTCACCTTGG 2067 28 100.0 33 ............................ TGATGCCAACAATCTGGTCGTGTTTTTCTTGCT 2006 28 100.0 33 ............................ CAATACACCGGCTCGTAGCTCAAACGTTTATTC 1945 28 100.0 33 ............................ TACAATATTGGCATATGACATTCCTGCAGGGTC 1884 28 100.0 33 ............................ TGATTGAAGGTCCTAGCGTAAAATGGCTGATTA 1823 28 100.0 33 ............................ CGACACTGGTTGATGCGATTACCGATGGCAAGC 1762 28 100.0 33 ............................ TGTTAGAGAAATATCCGTGTTTTTTCGTAAATT 1701 28 96.4 33 .........A.................. TAAGACTGGTGAATTGGCAGATTGGAATATCGA 1640 28 100.0 33 ............................ TGTTTGTCAGCAAACAATAGGTTCATGGCATCT 1579 28 100.0 33 ............................ CAGTATAATCATAACATAGGCACCCCCCACAAA 1518 28 100.0 33 ............................ CTGTATACCGTTTTGACATCGTTTGTTGCGTCT 1457 28 100.0 33 ............................ TTTGTCTGTTTGGCAGCTTCTAACTGTGATGCA 1396 28 100.0 33 ............................ TTACTTGTAGCCACATTTTTTTATAAACTCCGG 1335 28 100.0 33 ............................ ATAATCGTCATGTTGGCTGATTCGCGGCTATTG 1274 28 100.0 33 ............................ TATCTCGGCTTAAAGAGTGGCGCGTTATTCTTT 1213 28 100.0 33 ............................ ATCAATTCGATCAATGGATTTTCCACCTTCATA 1152 28 100.0 33 ............................ TCCAGACTTATAACAGCAGGACAGCTTGAATAC 1091 28 100.0 33 ............................ TGATTCAAAGCTATATTGCTAACACACATAAGG 1030 28 100.0 33 ............................ TCATCATAGGCACGTTATCCTTAGTCCAGTTAA 969 28 100.0 33 ............................ CGAAGGTAACCAATGCAGATTAAAGTACTTAAA 908 28 100.0 33 ............................ CATTGCAATGATTGCCCCACCTGGCGCTGGTAA 847 28 100.0 33 ............................ TATCCAATCAACCATGCGTTGTATGCGCTACTT 786 28 100.0 33 ............................ TAATTTGTGGCTTGCAAACCAATATTGGACTAA 725 28 100.0 33 ............................ GAGACCGTGGTGTGGAAGCTCAAACAACGCAAG 664 28 100.0 33 ............................ TTTGACGTTGGACAGGTTTCGACGGCTCAGCTA 603 28 100.0 33 ............................ TGGCTGTTACAGACTACCGCGAACAAAACTGCG 542 28 100.0 33 ............................ CAAGGCTTAGCCAACGGTGAAAGCTTTGAAAAA 481 28 100.0 33 ............................ CGAAGTAACCGCTAAGGGCTTATCCATGCCACG 420 28 100.0 34 ............................ TGCTTGTTGGGAGTAACATATATAGCGATATTTC 358 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ =================================== ================== 47 28 99.8 33 GTATTCCCCGCACGAGCGGGGGTGATCC # Left flank : GATCAAGATTCAATTATAGCCATTGGGGCAGTTAAACACGATCAGACAGGTAAAATAGAGCACATACAACAATTTATTAAACTTGGGCATCCGTTGCCCAAAGAAATCACAAAATTAACCGGTATTACAGATAGTAAGTTAGCAACTGAAGGTGTGGAGTTAGATAATGCTATGGAAAATTTTCGAGATTTTGTCGGAACATTGAAAATCGTCGGTTATAATATTAGTTTCGACCTTAATTTTATCAGACAAGCGTTACGTCAACTAGGCGAAAATAATTTGGTCAATCAGAGTGTTGATTTATTATCACTAATTAAGCAAATTCAAAAATTCTTGCCTAATTATCGTTTGGCAACTGTTCTAAAAAAATATAGTATTAATAATGAACAGGCACATGATGCGTTATCTGACGCACAAGCGACTATGTTGTTAGCGGAAAAACTCATTGAAAATGGGCAATTGGAGATTTAGAGATGTTAATTCTATAGGGATCGTTTAGT # Right flank : CCTTCAATTATAAGCTTGACGGGCGTGTTTTGTCGTATTTCTCGTATTTTCGGGAATGACTTTTGCGATTTGTTATGAGGGTCCAGCTAAATGGGATATTTATATATATATAGATACGTGTGGTGCTAGTTTGTAACATTTAGAAATTTAACAAAAAAGTCCAACCCAGTTAGACTCATAAGTGACAAAACTTAAAAGGAGTAATAACTGTGTTGAACCACCTCAAGTTTAAGCAAAATCGTCACGAATTACAAGTTAGTTTCCATTACTTTTACCAGTTATGTTCATTGCTTTATCAGCGTTATTGTCCGCGTAGCGTCATTGAGCGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.90,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6603-656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBBT010000064.1 Loigolactobacillus coryniformis subsp. torquens strain 42L Contig_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 6602 32 100.0 35 ................................ ATTGTCGTTCAAAATAGATGACACTGAAATGACTT 6535 32 100.0 35 ................................ GCTCCAGAGAGTAAACAACACATCACCATCGAAGT 6468 32 100.0 34 ................................ AACAGAGTGATAGCGCACGGCCATGATTGGCTGT 6402 32 100.0 35 ................................ CGATTTTGCCAGTGCACCAGATGTGACGGCTTATA 6335 32 100.0 34 ................................ GATAGCATCGTTAGCCAAATCCCAATCGCTTACC 6269 32 100.0 35 ................................ GATCACTGTTTTACCAGTATCACGGTAGCTGGATA 6202 32 100.0 33 ................................ TTACATTAGAAATCAATGAGAAGACACTCTACA 6137 32 100.0 33 ................................ TCCCTGTATTGCTGATTATACGAAGCAGTACAA 6072 32 100.0 34 ................................ TGTGCATTATACCCAAAGCGGCCTTTGTTCAATT 6006 32 100.0 34 ................................ TAGTATGGTTTTACTCTTAGCATCGCAGTGATAA 5940 32 100.0 35 ................................ GATCATACCGTCAATCATGACATAAATCTGACCAG 5873 32 100.0 34 ................................ TCTACGGAAGGCATCAAAAGCCTGTCTTGATTGG 5807 32 100.0 34 ................................ TCATAGTCTCTGCCAAACAAATCCTCCTCTCTTT 5741 32 100.0 35 ................................ AACAACAGCAATTAACTTACGCTTTTTTAATTTTT 5674 32 100.0 34 ................................ AAAACCTTGCCAGTTATGACTGCCCAGTTATAAT 5608 32 100.0 34 ................................ TGCTGGTTATGAAGACCTTGTAAAACGTGGTTAT 5542 32 100.0 34 ................................ AACTCGTCCTTATGATGGGGCAAAAGGGGGTCAG 5476 32 100.0 35 ................................ TTCCATTTGTTCAATTGTTCGATCTGCCTTCTTAA 5409 32 100.0 36 ................................ CGGCTAGCTGATGACAGTAAGCAACGCTTGACGGTC 5341 32 100.0 34 ................................ AGCCAATCGATTACCTCCTATTCTCATATTTAAT 5275 32 100.0 33 ................................ TAATAAATAATGCAAAAAATCATTTGTCAAAAC 5210 32 100.0 35 ................................ AGCCCTACTGTCCCAAGGGTTGTAAGAATGTTAGA 5143 32 100.0 34 ................................ TTCCATTTGCTCGATAGTACGGTCCGCTTTTTTG 5077 32 100.0 34 ................................ CGGTACCGCAATTATTTATTGACAACCCGATTAC 5011 32 100.0 36 ................................ AACTCGGTTGCTGGTTATGCCAAGTTAGTTAGTCGC 4943 32 100.0 34 ................................ TCCCCCTGGGTGTCCCGTGTTAGATTCGTCCGAT 4877 32 100.0 35 ................................ ATTTTTTGCTGTTATAACTTCTTTGTGCCACCAAA 4810 32 100.0 34 ................................ TACCGCAGAATCACTGATTACTCCAGCTTCGTAA 4744 32 100.0 34 ................................ CGACATGTGGCACTGACTCAACCTGAAATGTACA 4678 32 100.0 34 ................................ CGACATGTGGCACTGACTCAACCTGAAATGTACA 4612 32 100.0 35 ................................ CAATCAAGGCAAGGATAAAAACATGGCTGAGGAAG 4545 32 100.0 34 ................................ TTTAGTGTTAACTTAAGCCCGTTTAACTCAGCTT 4479 32 100.0 35 ................................ GAATTATTATGTTTGCCAGGCAAGCGAAGTACTGA 4412 32 100.0 33 ................................ CTGAAAATAAGAAAGACAGTAAAAAAAGACACT 4347 32 100.0 36 ................................ ATGCTGGTAATGTTACTAAATCCTATTCGAACGTTA 4279 32 100.0 35 ................................ AAGTTTACGGTGGTTTAGACCCATTAACAGGTAAA 4212 32 100.0 36 ................................ GTTACCAGAACGTCACGTGGAGTACGGACGATCTAG 4144 32 100.0 34 ................................ ATATTCAGATAGATAGTCTTGCATCATAGCTTTG 4078 32 100.0 35 ................................ TGTATAAGACTCAGTCGCTGCCATAAACTCAGAGA 4011 32 100.0 35 ................................ AAAAAATTGAGAACGATTTGAGAACCGCACCCGCT 3944 32 100.0 35 ................................ TAAGTCACCTTGTTTGACCAATCCATCACTCTTGA 3877 32 100.0 34 ................................ CTTCTTGACTACTAATATCATTACCTAAGGTCCG 3811 32 100.0 34 ................................ CGGATATTTAACAATATGATTAAGCCAACCGTTG 3745 32 100.0 36 ................................ TCAACCGATGTTAAGAATGCTTTTAACAAAGTAAAA 3677 32 100.0 35 ................................ TAAAAGAAGCCACCAGTTTGAAGCCGTGTATCCAT 3610 32 100.0 35 ................................ AGCTAACACAGCTTTTTTAACTAATTTTTTGCAAT 3543 32 100.0 33 ................................ TTGCGACTGCCCTGTAAAACAAAGTAATATGGT 3478 32 100.0 34 ................................ TGCCTTTACGCGAAAAGATGGTAGCAGCTTTTAG 3412 32 100.0 34 ................................ CTTATCTGACCAATGGATCAACTGATCTAATTGA 3346 32 100.0 35 ................................ ATTGTTAACGCTATTGGCATAGCGATTTAATTGAT 3279 32 100.0 34 ................................ ATAATCGCCATCATAAGCATTACCCAGTCGAATA 3213 32 100.0 35 ................................ TGCCTTACACTCGGTCAATTGCTTTTTATAATCAT 3146 32 100.0 34 ................................ ACAAACAACTTGATTCTTTTCCTTGGCATTTAGT 3080 32 100.0 33 ................................ CCACTCAATGTGAGACTTAAGTTTCTCCAATAA 3015 32 100.0 33 ................................ ACTTGAAATAACTAAGCGAGCGCCTTTTAAGCG 2950 32 100.0 37 ................................ GCCCTCAGCAAAAGACCAGGATTATTTAACTAGTCAT 2881 32 100.0 34 ................................ ATTTTTATCAGCCTCTTTTCCTAAGTGATAAAGG 2815 32 100.0 33 ................................ TGGGCATCGTTAAATGACTTAGTCGCCTCAGCT 2750 32 100.0 35 ................................ ACTGCCTAAATCATCTAAAACAATAATGTCAGCTG 2683 32 100.0 32 ................................ CATTCCAGCGATAGGATGTTATCCTTGATATC 2619 32 100.0 36 ................................ TGGACGCGGTTGGCATGGTCCCAGTGCTAGTGCCAC 2551 32 100.0 36 ................................ TAAAAAGTGGGCTGTACAGTACGGTGTATCAACAAC 2483 32 100.0 33 ................................ GTTATTTGCAAAAGCCTCATCAACCTTTGACTT 2418 32 100.0 35 ................................ TGGCCATGAATCAAAGCTGGCGGAACACCAATCAA 2351 32 100.0 34 ................................ ATCACATGGCTATTGACCGCAGATCGCAACTGCT 2285 32 100.0 34 ................................ TTGGATGACCGTGGGCGGGCGTGGTCGTTTACGA 2219 32 100.0 35 ................................ ACGTAGTGCCTTAATTTGCGGCTGATAATCGTCAA 2152 32 100.0 35 ................................ TTAATAATCAAACTAGCAAACTTTAAAAAGTCCTT 2085 32 100.0 34 ................................ CTTCTTTCTAAAGTTGTTGTTTCAATTTTTCGTA 2019 32 100.0 34 ................................ TTAATCCGCTGTGATCAAAGCACCGCCATTATTT 1953 32 100.0 34 ................................ TAAAATTGCTAAAGCTGGGCAAGCTAACCACGAC 1887 32 100.0 36 ................................ ACCAGCACAAACGAGCGGACGATTTCCAATGCGGTT 1819 32 100.0 34 ................................ GCCGCTTAAAATCATTAAGCAATTCATGTGGCGT 1753 32 100.0 34 ................................ AATTCATGATACGTATTTGACTGGTTATCAAGAT 1687 32 100.0 34 ................................ AGTTGGGACGCTGGGACTTTGCGTTATTTTTAAT 1621 32 100.0 34 ................................ ACCGCCCTTAATTATTAATTCTTCACTGTTTAGC 1555 32 100.0 35 ................................ TTGTGATGCGGTCACATCTTCTACGCTGATTGCTG 1488 32 100.0 34 ................................ TTATAGCGTGCCCGATGCAAATAAGATTTTGAAG 1422 32 100.0 35 ................................ TGGAAATTGCCGTAGCTCTTTATTGCACCAACGGC 1355 32 100.0 34 ................................ CCTTATGCTGGCAAGGTGTTCGGGCTTACCTTTA 1289 32 100.0 36 ................................ ACTAGCTGGATAGCATCTTCGAGGGTGTCCCTCTCG 1221 32 100.0 35 ................................ ATTATCGTTCCCAGGGTTATATGAGTGTACCGCAA 1154 32 100.0 36 ................................ GCTAGTCCGATTGCGTCATAAAAAGTTCTTGACAAT 1086 32 100.0 34 ................................ ATGCAGTACAAGGACACCGCGGGCACACTAACCA 1020 32 100.0 33 ................................ TCAACCAATTCTTTCGATAAATTTGGTGTTTCC 955 32 100.0 36 ................................ ACCAACTAGCGTATCTGGATTAGCGTAATCTGAAAT 887 32 100.0 36 ................................ AGAAATATCCTTAAAGAAATGGCAAGCCTCCGGAAT 819 32 100.0 34 ................................ TGGAACACCAGAATTTTTACCGTCACGTCCCTTT 753 32 100.0 34 ................................ TTTGTTATCAAGAAAATCTCCCCCTTAATTAGCA 687 32 87.5 0 ........................G.CT...C | ========== ====== ====== ====== ================================ ===================================== ================== 90 32 99.9 34 GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Left flank : CAATAATGATGATAAAATTTCAATGATAGTATTAATTGCCTTGGTAAAAGATTTGCAAAGTGCGAGTAGAAAGTGCACATACTTTTTCAGTTGGTTTCGCACCTTAAAACACTGGTTCTTTTTTATTTTATTGCACTTTATTGATTTTTTACTTTCCTAATTAATATTATCCACAAGATATAGAAAACAAATTATGTTAAAACTATATTTTGC # Right flank : AGTACAACAACAATTCCCATAAATCTGTTAATACCTCACAACAATAGTTAGTAAGCACCAAATAACTGACCGACTATCAAACTAACTAAATCCAAGTTATGATTACCTCATCAAATAATTGGTGAGGTGATTTTTATTGGCAAAACCCGATATTGTACAAATCAAAATGGATCAATCTGAACCACAGCTACGCGCAACAACCAAGGCGCTACAAATTAAGGTTGGCACAAATAAATCAGTGATCGTCTACAATCGCATTAATAACTATATTTTAGAAGCAGTTTTAAAGGCGGTGTTCACCGATGATCATTGATCAACGGCAAATTCGCCAAGTCTATTTAGTGTGCGGTAAAACGGATCTTCGCCGCGGCATCGACGGTTTAGCCGGCGTTGTCCAGGATCAATTTGAATTGGATCCTTATAATCAGGCGCTCTATTTATTCTGTGGTACTAGGAAAGACCGCTTTAAGGCGCTCTACTGGGACGGTGATGGCTTTTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //