Array 1 1003374-1002046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERVU010000001.1 Listeria welshimeri strain UCDL122 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1003373 29 100.0 37 ............................. TCAAAAATCAATTCGCTATTTACAGGCAAGAGTGTCG 1003307 29 100.0 35 ............................. AAATTTTTATGCCTTTAGTTTATTATGCCATATTT 1003243 29 100.0 37 ............................. TCGTTCATTTATATCAAACCTAATATAGCTAATAACA 1003177 29 100.0 38 ............................. GAATATTATGAGTTACATTTAGATGAAATGCGACAACA 1003110 29 100.0 38 ............................. GAAGAAAAAACTGCATTTTTTCAGCAATGTGCAGATAT 1003043 29 100.0 36 ............................. AATTTTCGTTATGAAGTACTTGAACATGTCTCTGAT 1002978 29 100.0 34 ............................. TTTTTATGAATAACGTTTTCAGTCATGTTCTAAC 1002915 29 100.0 34 ............................. CTATTGCCAAAAATGGACTTTAAATCAAATCCTG 1002852 29 100.0 35 ............................. TTTATACATCGCGATGGACAAAAGCTGGCAGAGCA 1002788 29 100.0 34 ............................. TTGTTTAACTTTAGCTGTTGATAAAATTAGCAGC 1002725 29 100.0 37 ............................. ATCAAATAAGATTCTTTTGAATTTAACATGTTAAATT 1002659 29 100.0 37 ............................. ACATTACAAATAAGTATTTCCGCTCCCAAAAAGGGCG 1002593 29 100.0 35 ............................. TATTCCAAGACTGTTTACTTGCGTTCTGGTACATA 1002529 29 96.6 35 ............................A GTAAAAACCTGTGCTTGATCGCTCAGCTGCATGAA 1002465 29 100.0 35 ............................. TTCATTCCATTTTCTAACATATACTTATAAATTTC 1002401 29 100.0 38 ............................. ACTTTGCGTGCTTTTACAAACATAATTAATCCTCTCCT 1002334 29 100.0 36 ............................. GTAAAACAAATTAATTAGTTCATGCAAGGTGCAAAT 1002269 29 100.0 37 ............................. TGGGTAAGAAAGAAAAAGAAAAGTTCTGGGAAAAAGC 1002203 29 100.0 35 ............................. TCTACAATTTCAGCAACAAAGTATTTCGTTTTCGC 1002139 29 100.0 36 ............................. GAATTATTTGAAACTGATACCGCCGGAACAGTCCAT 1002074 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : TCCTTCCCTCAACAATACACCCCCCAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCTGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAATAATCCCCACACAAGCCCTACCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATAACGATGAAAGTTAAAATAAATGCTAAAATGTCCATAAAAAATCCCTCTTTTCTATTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 301134-301763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERVU010000003.1 Listeria welshimeri strain UCDL122 NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 301134 36 100.0 30 .................................... ATTTGTTACTGTGTTTCTTGCATCTTTCCG 301200 36 100.0 30 .................................... ATCAAATACTTCCGTTAATACCGGATGGCT 301266 36 100.0 30 .................................... CGTGACAACTATGAGTGCCAAGAGTGTAAG 301332 36 100.0 30 .................................... CATAGAGACAATGACATTCAATTTGAGAAA 301398 36 100.0 30 .................................... AAACGGTTTTGGGTTTGCACACATTGATAC 301464 36 100.0 30 .................................... AAAAGATAAATCATTAGAGCAAGTGTTCTT 301530 36 100.0 30 .................................... GTATGAAGAAAAGAAAAAAGCGGTTGAAGC 301596 36 100.0 30 .................................... TGGAGGGCTTTTGCTTGCCTTTGATCGATT 301662 36 100.0 27 .................................... GAATATTCTCCCCCATCGCTAACAGGG 301725 36 83.3 0 ............CA.....C.....T.A.......G | A,A,C [301750,301756,301759] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATTACTATTCTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGTTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAAATTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAGCTATTAATAATTAGAAATGAAAACCGATATAACTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //