Array 1 7721210-7719907 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJNB01000001.1 Saccharopolyspora spinosa strain DSM 44228 Ga0074763_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 7721209 30 100.0 38 .............................. TTGCTCTCGTGCTCGGCGGGGACCGGCGTCGTGACCGG 7721141 30 100.0 36 .............................. GGTCGTAGCCGGCGGCTCGCAGCGCCTCGCGCGGAT 7721075 30 100.0 37 .............................. AGCCCGCGTAGCGCGTTCGCCCACGCCAGGGAAATGA 7721008 30 100.0 37 .............................. TCAATCAGCAGCAGCTCAAACGGCTCATCGGCGGAGT 7720941 30 100.0 35 .............................. ATCATCGACGACCTCAGCCCGTTGTAAGCGGCCAC 7720876 30 100.0 35 .............................. GCAATCTGATGAGACACATACAGCGCGATGAACAC 7720811 30 100.0 42 .............................. ATCTACGGGGCCTGCTGGACCAGCAGCGGCTCCGTCGTCGCC 7720739 30 100.0 35 .............................. CCGCCGGTCGCGCGAACCAAGCCGGGAAGGCGAAG 7720674 30 100.0 37 .............................. GTGATCACCACGCTGTAGCGGCCGAGAAGCTCATCCC 7720607 30 100.0 40 .............................. CGTTGGTCGCCGCCGGGATCGTCCCGCTCACCACCGCCCC 7720537 30 100.0 36 .............................. CCCCGACTGGCCTGGAATTGTCCGAAAAGATCGCCG 7720471 30 100.0 38 .............................. CGTACGAGGGACCTCGCGACATTGCCGGGCGACGCACT 7720403 30 96.7 38 T............................. ACGTTTCAAGGGCATGCCAAGCACGGGACTGGCGGGAC 7720335 30 100.0 38 .............................. TTCTCAGCGCCAACGGCTGTACCGATGTTCCCCGAGGC 7720267 30 100.0 37 .............................. ACGTTCCAGCGCGTTTAGTTTGGCCGGGCTGTACCCG 7720200 30 100.0 38 .............................. GGAAACCGAACGCATCGACCCGTCCCGCCGGCGTCCGC 7720132 30 100.0 36 .............................. ACGGCTTTGCCGTTGACTTCGACCTGGTTGTGCCCA 7720066 30 96.7 37 .......C...................... GTAATCACGATGTCGCGGAACAGTCGGGGAATGGAGG 7719999 30 100.0 34 .............................. ACTGGTGCCCCACCCGCTACGCCGCGATGGTCAG 7719935 29 96.7 0 ..................-........... | ========== ====== ====== ====== ============================== ========================================== ================== 20 30 99.5 37 GTCCGCATCGCCCCTACGAGGGGTAGCAAC # Left flank : CCACCGTGAAACACCGCGAACTCGGCCGGAACGTCACCTACGACGAACTCATCTACCTCGACGCACTCGCCCTCACCCGACACTGCCTGGAAGACCAGCCCTACAAGCCCTTCCGCGTCTGGTGGTGACAGATGTACACGATCCTCGTATACGACACCGCCGTCGAACGCAACGCCGCAGTCCTACGCACCTGCCGAAAGTATTTGCATCACATGCAAAACAGCGTCTTCGAAGGAGAACTCAGCCAAGCCCAGATCGTCTACCTCGAATCAGAACTCCGCCACCACATCGACCCCGACTACGACCACATCCTCGTCTACACCTTCCCACCCGGCACCACACCCCACCGCCAAGCCTGGGGCAAACCCGACGACCGACCCCACAACATCCTTTAACCACAACAGAAACTCACCCACGCCAACCGTCAAACCCCACGAACGCTGCACCCACCCGCACATTGACAACATCAACAGCGCTGCGACCAGCAGATTTACCCTCGG # Right flank : TCCCGTTACTCGCCCCCCGTAGCCGCTGGCCCGGAGGGTGCGAGGGTACGAACGGAGACCCGTGTGCCGGGGTGTGGAGCGTGGTCGGTGAAGTAATCGAAGCCACGGTACACCTTCATTTGCAATGGCTGCTGACTTCTCGTGCTCGGTTGGTGTCGTTCCGCTGGCAGCTGATCTGCGTCGTGTCCGTTCAAGCTGCCTCAACCGCAGGGAGGGCGTTTAGTCCTATTTCCACGGTGGTCGCGGCTGCGTCGTGGCTGCTCCGCTGGTCTAGCAACGTGGTGAGTGCTGTGGTCCAGCGTTGTTGGAGGGCTTGGAGGAGCCGGGTTTCGATTTCGGGGGCGACGTGGGAGTAGATGTGTTCGATCTTGTCGGGGATGACGTGGCCGAGTCGGCGGGCTTGGGCGACTTGGGGGATGCCGTCGGCGATGAGCCAGGTTTTGTGGCTGTGCCGGAAGCCGTGGAAGACCAGTCCGGGCACGATCGGTTGGAGGTGGTGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCATCGCCCCTACGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 7731182-7730091 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJNB01000001.1 Saccharopolyspora spinosa strain DSM 44228 Ga0074763_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7731181 30 100.0 35 .............................. ATGCAGTCGACCGTCCACAGCGGAAGGCCGGTGTC 7731116 30 100.0 34 .............................. AACAGCAGCAGGACGTGCGCGTGGAGGTGCCAGC 7731052 30 100.0 38 .............................. TGACACCCTGCACGCCACCGTCGCCGCCGCGCTCACGC 7730984 30 100.0 36 .............................. GCGCTCACCTCGTCCGGCGAACGTAGCGGCGCTGGC 7730918 30 100.0 37 .............................. CCTACGAGAAGGAGTGGGCTGCGAACGACCCGGCCCG 7730851 30 100.0 37 .............................. GAGAAGCCCGCCGACACGGTGGCCAGCGACATCCCCA 7730784 30 100.0 37 .............................. GCCGACGCGGGCGGGCTAGAAACATAAGTGCGGCCCC 7730717 30 100.0 37 .............................. GAGAAGCCCGCCGACACGGTGGCCAGCGACATCCCCA 7730650 30 100.0 37 .............................. GCCGACGCGGGCGGGCTAGAAACATAAGTGCGGCCCC 7730583 30 100.0 38 .............................. TTTCCTTGCGCAAACAGGAGTCCGGCGGTTTCGAGATC 7730515 30 100.0 35 .............................. CCGAAACAGCCAATGGCCGTCGCCCGGCAGCTCCA 7730450 30 96.7 35 ..................C........... ATCTCCCACAGATTGATGGTGCCGCCACCTAGCGC 7730385 30 96.7 38 ............................G. GAGGACCACTACAACACCGCCAACATGATCGTTGACGT 7730317 30 100.0 36 .............................. AGTACCGCCAGGTATCCCTCCACCAACGGCTCATCC 7730251 30 96.7 34 .....................C........ TCGTTGGCGATCGGCTCGGGGGTGCGCTGTTCGG 7730187 30 100.0 37 .............................. GTGCTGGTCACCGAGTCCAACGCCCAGGCCGCGGACG 7730120 30 86.7 0 ...........TA..G............C. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 98.6 36 GTCCGCATCGCCCCTACGAGGGGTAGCAAC # Left flank : TGCAAATGGGGTCACATTTCACGATCACGCTGTGTAGTAGTTGGTTAAGTTTCGGCAACAGATCCGAACTGCGGTGATGGGCGTTGAACGGCGGTGCGCTGGTTGGCGGCGGTTGTCGCGAGCCTGAACGCGGGTGCGAGTGGGTGTGTTCCGTTCGCGGTGGTGATGTGCGGAAGGGGGCAGTCGAGGGCTGTTGAGATTTGCAGCTGCACCTGCAAGCTCCCACAAGCGATCGGGTACCGGGTCCCGAAGGCGTGGATAGTTTTTGTGGTGGTCAAGTGTGGTTGGCAGGCGAACGATCACGGAGCGGTCGTTAGCAGGGGGACAGGAGAATCCGGATCTCATGGCCGTTGGCGTAGCCTCGGTGCGGTTGCGAAGACTCGAACCTAGCTAGCCTGGTCCAGAAGCCCACGCCGAACACCTGAAGAAGCCGAGAATTGCTGCAAATGCTCGAACCTTGACAAGATCACCATGCTTGCGACCAGCAGCTTTACCGTCGG # Right flank : AGGATCTTGAATCGGGTGCCGGAGTTGATCACGCGTATTTACGGACGGCCGGTTGTTTTCATCGTGTTGGGCGGTGAGTTGCGCGAGTGTCTGATCAACAAGTGGTGTCACTTCACATCGGCAAAGTCATCTGCTGCACACGGTGAAGTAGGACCCATCGGCGTCCACTGGTCCGTTGAGTCGTCGCCGTTGGGGACTGCGGTCGCACGTGAAGATCAAGTCGGGGTCAAACCGACAGTGTGGTCGTGGCGAGCTTTTGTCGCTGTGGTCGGGTTCGTGACTGTAGTGCGAGTTTCAGCGGTCGGCCGGTTGTGTTGTGTGCTGGGCAGGTTCTCTGAAAACTGGTTGCAGAGCCCGGTGGGCCCTGTTCGTGTGCGTTGGGCTGAATGGGTGAAGTTGGTTTAGGGTGGTGTCGGCTGCGGGCCGCTGTGCGAGTGAGCGTGCGTCAGTTGCGCAGTGGTCTGGTATCGGCTGGTTCCCTGGTGAGGGGTTGCAACGTA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCATCGCCCCTACGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //