Array 1 1287-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMPZ01000037.1 Prevotella copri strain Indica contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1286 33 97.0 33 ................................T TCTTTGGAACCTTTGCGTCATACAGAGACTCCT 1220 33 97.0 32 ................................T TCACTCTCTTCTTGAGAGTCTTCCCAATCCTG 1155 33 100.0 32 ................................. ATGTGTCGTACGGGGTCGCACCGCACACCTAC 1090 33 100.0 33 ................................. GAGATAAAGCATATAATAATGTATGATTTTCAA 1024 33 100.0 32 ................................. ACCCCTGAACAAACTGCTCCTGCTGATACGTC 959 33 97.0 32 ................................T CAACCAGTCCAAGGGTCAAATCATTTCCTCCC 894 33 100.0 34 ................................. TAGATGAGTCCGAGATCTGTGCAGGTGGTTTTGA 827 33 100.0 32 ................................. TACTAGCTCAACTTAAACTTCTTGGTTTCGGT 762 33 100.0 32 ................................. CGTGAAATGCTATGTAGAGATAGCATTATTTA 697 33 97.0 33 ................................T TGCGTAGCAAAATTTTCAGGCTCAACTCGTCGA 631 33 97.0 33 ................................T AAATATTGTTGCGCCCTGATAACGGCATACTCC 565 33 97.0 34 ................................T GCTCTGTGCTCTGCCTCAAATTTGGCGGTAGCTT 498 33 97.0 33 ................................T GAATTTTAGGAAAACCCAAAATATCAGTACCAA 432 33 100.0 32 ................................. GGTGATGAGGAAGGAAAGAGCAAAGGAGCAAG 367 33 100.0 33 ................................. TTACTGGTTACCTTACCAAGAAACCACAACAGA 301 33 97.0 33 ................................T TGTGGTTGGAATACACAAGGAATAGGAAAATGT 235 33 100.0 33 ................................. ACTGACCGTGAACCTCATCGATATGTGTCTAAT 169 33 100.0 32 ................................. CCATAAACGGCAAACCATTGGCATCTACCCAC C [163] 103 33 93.9 32 G...............................C AGAAGCTTCTTCATTATCGAATACCCATTCAA 38 33 90.9 0 G............................G..T | ========== ====== ====== ====== ================================= ================================== ================== 20 33 98.0 33 ATCACACCCTTCGTGGGTGTGTGGATTGAAACA # Left flank : TGATGATTATCCAGTGTTTTTAATCAAGTAGTGTATGTTTGTATTGATTACTTATGATGTAAATATTACCTCGGCTCATGGTGCGAAACGTTTACGCAATGTAGCAAGGGCGTGTTTGAATTACGGAAAGAGAGTTCAAAACTCTGTTTTTGAGTGTATTTTGACGGAATCTCAGTTTTTCGTATTGAGGGACCAGTTGAAAGGGATTATTGATACCGAACAAGATAGTATTAGATTCTATATTCTTGGGAAAAATTGGAAACGTAAAGTTGAGACTTTGGGTAAGGATATTGGGCTTGACTTTACTGGTGAGCTTATCATTTAATGTATAAGGGTGCGAACCAATAGTGTTGCATAATAACCTGTAGTTTCGCACCTTCTTAAAATCAGTTGCTTATAAATATTCTTCCTTTTATAATAATTTATGCGTAATTATTTTGCCATCTTTCGCAAAATCATTATCTTTGCATCGTGATATTCAGCCATTTGCTGAATATGCA # Right flank : TTATAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCACACCCTTCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 25481-24592 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMPZ01000039.1 Prevotella copri strain Indica contig00039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 25480 33 100.0 32 ................................. AATAATCAAGTGGAAGATTGCTAAAACGCAAA 25415 33 97.0 34 ................................C TAGAGAGGTACACGTACCCAAAAGGAGCATCATT 25348 33 97.0 33 ................................T TGATGGTGGTGATCTGCTTGTCGTACTCATTGA 25282 33 100.0 33 ................................. ATATATTGACGTGGAGACAACTTGCGAGATACA 25216 33 100.0 33 ................................. TCATCCCATTGAGGATAAAGAATAGTTCCATTA 25150 33 100.0 32 ................................. CAGATGCGTCAGCGTATGTTGATGGCAACAAT 25085 33 97.0 33 ................................T TAAAAAGAAAGATAAGCTAACGGCATATTGGGA 25019 33 97.0 34 ................................C GTCCGAAAGTGCTCGCTAGTAAAAATCCTATTAT 24952 33 97.0 34 ................................G AAGAAGTCCGCTTGAAGGTTGAGAACGCTATGCA 24885 33 100.0 33 ................................. CCGGAATGATGGAGGTTGACCACTATGATGCAG 24819 33 97.0 32 ................................G ATTCCGTGCGTGGTAGCAACTTCCACTGTGCC 24754 33 93.9 32 ...........T....................T TTCCAAGTAAAGATGTCGCTCGCTTATGGCTT 24689 33 100.0 32 ................................. GACTGGTGACTCCAGTAATGCCGATGTATCCA 24624 33 90.9 0 ..............................CTT | ========== ====== ====== ====== ================================= ================================== ================== 14 33 97.6 33 GTCACACCCTTCGTGGGTGTGTGGATTGAAACA # Left flank : TGGGTGTGTGGATTGAGACTTATAAGGCGAACCTTTAGCACCTTTAACACC # Right flank : GGTTACCTGCTTGTTACACCTTGTCCAAATAGGGGCACCTGCATAAACCTGTGTTTAGGCATAGATGTTAGTGGGTAGGGTGTCCAGTTCTATGTTCCAATATTAACTTACTTGTTTGAGAGCTTTGGTTCGTTTATAGTAAAATGATTGATCTGGTCGCAAATTGCGACTGGTTTAATAGCTTGAAGCTCTTTACGGCTCGTTCATATACATACACAGAACTTATATCCAATAACTCATCGCCCATCAGCTGATTTCCGCTTGCACAACAGATGCTGGACGAGCGCATATCAGCTGTTATGCAAGCGCACAACAGCTGTTGTGCGGCTGAAGATATAGGCTTCTCCGGCTTATAACATTAATTCTTCCGGCAACAAGTAAAGGTTACTCCGAAGACTTTTTACGTAAAACCGATGCAACAATGATAGTATTTACAAGCAACAATGATAGTACTTGCAAGCAACAGCGATAGTACTTACAAGGCGCAAAGACGTTACTGA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTTCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 107506-108940 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMPZ01000008.1 Prevotella copri strain Indica contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 107506 37 94.6 37 .............G..........C............ ATTGACTTCATAACTCCAATGATTTAAAAATGAATAA 107580 37 94.6 35 .............G..........C............ TCAGCCTTGTACATCTTCTCCAAGCCTAAAAGGCT 107652 37 94.6 38 .............G..........C............ CTTATCAAAATCTTTAATCATAGTGTATTTTATTAAAT 107727 37 94.6 37 .............G..........C............ AAACCCATCTTGATTGCACCATCTGCTTTGTTAGCAT 107801 37 91.9 35 .............G..........C.........A.. TTGAAATAATCTTTTCCATAATCTAATGTTTTAAT 107873 37 97.3 35 .............G....................... TGGAAATCCCTCTTTAAGAGTTTACTTCTTGATAA 107945 37 100.0 37 ..................................... TTCTAAAATTTTAAAGGGTTCAACAAATTTTATTCTG 108019 37 100.0 37 ..................................... CTACCCAACTCTTTAGAGTATGGCAAATCAATGCTGT 108093 37 100.0 36 ..................................... TTGTGAAACGCACATTACTAACCATTCCTCTAGTGT 108166 37 100.0 38 ..................................... ACTACTTGTTCATATATTATGGAATCTTTAGCCTTGTC 108241 37 100.0 37 ..................................... GGGTCAGTAGCCATAAGAGTAAATGCAACATCATCAG 108315 37 100.0 37 ..................................... AACTCGTTGGTAACACCTTCAACAAACTCACCAGTCT 108389 37 100.0 37 ..................................... GGGTCAGTAGCCATAAGAGTAAATGCAACATCATCAG 108463 37 100.0 37 ..................................... AACTCGTTGGTAACACCTTCAACAAACTCACCAGTCT 108537 37 97.3 35 ........................C............ AACTCTGTTGCACTTGCTTTAAAATCTTTCATACT 108609 37 97.3 40 A.................................... CCTTGCATCCAAGCTTCTATCGTGATGTCAGCAGATGCAG 108686 37 97.3 35 ........................C............ AAAGCATTTGCCGCTTGTGCAGATGACTTCTGTAC 108758 37 91.9 35 ....T.....T.............C............ CCCTCTATGGTGACGTTAGCCATTACGGCAACTAC 108830 37 94.6 37 .............G..........C............ CGATTGGTGATTGTCATCGCATTGCGCAAGCTCATAG 108904 37 83.8 0 ..T..........................GA...TCT | ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 96.5 37 GTACGAGACCATCTTCCACTACAATAAGGATTAAGAC # Left flank : TTCTCTGAATAGTTCCAGCTGTCAATCTTTCCGTAGCGTAATAAGGATGATTCCCAGCTAGTTAAAATGTTCTTAATCTCAATTTCCATTACTCTCATAATTTTAATGTGCTCCTAACTTTAACCATAGGTGCTTTGGTTTTCTGGGTGCAAAGGTAAGAGTATATAGTGAAATGATATTTCACTGGCTCATTTTTCTTGTTTTTTGTCATTTTGGTATACTTTCTCTACCTATTATATGCATGAATCATGCATTTTCCTTCATTTTACCCTGTTTATTGTTGAATTCGCTTCTATTGCGATGGATGCAGATAGTTAATAGAGTTAAATTTTTTGGTTGGAAATGGCTAAATATTTAAGAATAATTGGCTTGCATATCTCGAAAAATAGTAGTAACTTTGCACCCGCTAAGGAAAAGTTAATTTTCGGTTAAGAAAGGTAAAAAATTGTTTAGCTGAGTTCTTTAACTTATTGATAATCAGAATAGTCTTATAAGGCCGA # Right flank : TCTGTTTGATAGTACCTATGTTTTTTATTATTGATGGTGTATTTCTGTTAAATGCATTGATCAATTGTTATAAACCAAAAACGTTGGATAGAGGAGCATAGACGTTCTCATTTTTACCGCCAATGTTTTGTATGGTAGTTGGATATTGGTCGGAATTGGGCTGACTGAGAAGTGCCAACTGCATTTAAGAAAGGTTGCTCCCGAGTATGTACGACTAAATGTAGGATATATTTCATAGTGACAAACGAGTACTAACCTTGTTGCTTATATATCAGCCTTTCTTCCTTTGGTTTGGGAAAGAGTTGAGTTACTTCTCAACTAACTAGGTGTTGTGTTCATACTCTTACATCTGGCCAAAGGTTCTTTATTTTTCACTTGGTTGTGGTTTTAAATGGATATGGAGTGGGTTGATTAAGTGGGATTTTTTTGATATGTTTGCTTTTGAGCAGTCCATTCTTTAGGGTACACCTAAATGGGGCATACCCTAAGAATAGACCTTT # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGACCATCTTCCACTACAATAAGGATTAAGAC # Alternate repeat : GTACGAGACCATCGTCCACTACAACAAGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 117932-119632 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMPZ01000008.1 Prevotella copri strain Indica contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 117932 37 100.0 35 ..................................... CTCATCAGCTTTACGCTTTGGAAAATACTGAATAG 118004 37 100.0 35 ..................................... GTGTGCTTTTCAATCTGTTTGGTACTTCTGTGTAT 118076 37 100.0 34 ..................................... TGTTCTTCTATTTTGATACAATTCTTTGACTCAT 118147 37 100.0 36 ..................................... TCCAACTGCTTTGTAGTTGCTTTAAAATCTTTCATA 118220 37 100.0 33 ..................................... TTCTCTTTTTCTAATGTATCACATATATTAGTT 118290 37 100.0 37 ..................................... TTCAAGCTCTCTGCTGTCATTTTAAAATCTTTCATAC 118364 37 100.0 36 ..................................... TTCTTGCCTCTTTCTCACCGCCATTAACTACCACAT 118437 37 94.6 37 .............T....T.................. ACCATTGTCATTTATTGCGATTTCGGCAACCTCACCG 118511 37 94.6 35 .............T....T.................. GGTTCATATTGTTTGAACCATTAGCTGTCTGCACG 118583 37 94.6 34 .............T....T.................. TTAAAAGAGTAACCTGCTAAACTCGGTTTAACCA 118654 37 94.6 37 .............T....T.................. ATTTGGAGCATTACTACTGGGAGCCATGAATTAACCT 118728 37 94.6 36 .............T....T.................. ACCCGCGAAAACTGTGGCAAAATTGCCGGCAATCAT 118801 37 94.6 33 .............T....T.................. TCACATCAATGCGTGATACATTCATTTGTGCCT 118871 37 94.6 35 .............T....T.................. CGTTTGGCGTTACCGTACTGAGTCAAAGTCTCAAT 118943 37 94.6 35 .............T....T.................. TTTCATATTACCTGTAAGATCAGTATTACTAATAG 119015 37 100.0 35 ..................................... ACAAATGGCGGCATTCATACATAAATCCATTCTCT 119087 37 100.0 36 ..................................... TCACTGATACCGAGAGCTTCACCATCTGGATGGATA 119160 37 94.6 36 .............T....T.................. ACCTGTCTCCAAGTCTATAGTTTCACCCCAAGCTCC 119233 37 94.6 36 .............T..........T............ GGTCATGTGCTGCACCCATATCATCGGTGATGTCCT 119306 37 97.3 35 .............T....................... AAAATGATCTCATCCTCTTCAATGGACCAAGGTCT 119378 37 91.9 36 ..........T..T........T.............. AAATCATTCTGTTCATCACACGCTACCTCTTCGATA 119451 37 91.9 35 ..........G..T......T................ CGAGCGTATGTGTGAAGCTCATCATTAGGAGTAGG 119523 37 91.9 37 A............T..........T............ CCGTACCAAGTAGTCCATCTGGCGCCGCAATGGTAGT 119597 36 89.2 0 .............T..................-G..A | ========== ====== ====== ====== ===================================== ===================================== ================== 24 37 96.2 35 GTACGAGACCATCGTCCACTACAACAAGGATTAAGAC # Left flank : GCTAAGTTTAGCACCGTATGAATTTAATACGATTTCCATAGGCTCATGGTTTTAAATTTCTGAGTGCAAAGGTAGGGAGGGATTTTGAAATTATATTTCACTGGCTCAATTTTCTGGATTTTGATAGTTGGGTATGATTTCTATACCTTATTATATATAAGGTATTTTTCTTCTCTTCTTTAGAATCTTAAATACAGGTATTGGGGTGATAGTTGAGATGCAGAATTTATCTCCTTTGATGTTTGTTAGTGCTGAATCATGTTTTTTGTGGGGGACCTGTCGTTTGCCTTTGGGTTTCTGTTTCCTAAAATAGTTAATAGAACTAAATTTTTTGAGCTAAAAATGGTAGAATATTTAAGATTAATTGGCTTGCATATCTCGAAAAATAGTCGTACCTTTGCACCCGCTAAGGAAAAGTTAATTTTCGGTTAAGAAAAGTGAATAATTGTTTAGTAGAGTTCTTTAACTTATTGATAATCAGAATAGTCTTATAAGGTCGA # Right flank : ATCAATTATTTATGAGTTATTCATAGATAATATTGGTTCATAGGTAGGTTAATCGTTGCATGAAAAAATCCCATATCAAGGTTGTTGCCTTGGTATGGGATTGATTTTAATAATGCGATATTCTTATATTCAGTTCAGGCCTGTTTGGGCCTCTCTTGTCTTGTTTTATTTCCTAAAGCGGGTTCTTCACGTTCTTACTTCTGGTAGGAATCATAGAGTTCCTTAGCCTTGTCTTCGCCCAGGAAACCTGACAGCTTTTTCCAGATACCACTCTTGTCAAATGGCTTGGCAAGTTCCTTCACTTCCTTCTTGGATGGTTCCTGTAGCAAGCGGGTTGAGGTGTTGTAGAGGTCGTTGCAGTCAGATTCATTGAGCTGTGATGCCTCGGAGAGTTTTAGCCATTTCTCCACCTTCTGGAAACATACCTTGAATTCTTTGATGCTATAGCTAATGCCATCACCTGCGAGTTTGTCAAGAGTGGTGCCAAGACCAGCTTTAAG # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGACCATCGTCCACTACAACAAGGATTAAGAC # Alternate repeat : GTACGAGACCATCTTCCATTACAACAAGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 132093-133154 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMPZ01000008.1 Prevotella copri strain Indica contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 132093 37 100.0 36 ..................................... AAGTTTTGCGTGCTTTGTTGAGCTCAGTTAAAACCT 132166 37 100.0 35 ..................................... TTGCCGCCGCCAAATGTTACGTTGCCGTCTTTGTC 132238 37 100.0 36 ..................................... GTAAAGGAATAACCGGCTAAACTCGGCTTAACTAAA 132311 37 100.0 37 ..................................... CTTTCATAATTATAATAATTTGAATTGATAAATAAAC 132385 37 100.0 36 ..................................... AGTCTTCTACTGATACATTTTGTTCTCCGAGACAGT 132458 37 100.0 37 ..................................... GCGTTAAACGATTAGTTGGTACACGACCAACAGCAGT 132532 37 100.0 36 ..................................... AGTAAGTCCCATTGCAACATAGCAAACTCCAGGTGC 132605 37 100.0 37 ..................................... GCTTCCTGGACAATATTAATAGTTGCACCACTAAGAA 132679 37 100.0 37 ..................................... CTGCGAATGATCATAATATCGAACTCGTGAATAGCAT 132753 37 100.0 37 ..................................... TTGTATGGCATTGAAGGCAAAGGAGACTTCTTTCTTG 132827 37 91.9 35 ...A.........T............T.......... ACATCTGTCCACTGCTGCTTTGTTCCGTTGATGGT 132899 37 97.3 34 .............T....................... ATTTCACCCTTATCGTTGGTGACATCTGCCATAC 132970 37 89.2 36 ....T........T..........T...........T CGGCAAACAATGCCACGAAAATCTTCTTCTTCATAA 133043 37 91.9 37 ............T........T..T............ ATCTCTGCAGACCGATAGTCATAGTTTGCGGTACGAC 133117 37 75.7 0 ..TT.G.......T....T..T....T..T.A..... | T [133152] ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 96.4 36 GTACGAGACCATCGTCCACTACAACAAGGATTAAGAC # Left flank : AAGAATACTGATGGTCTGGAGACTACTAATGAGTTCGTTGCGAAAATCCTGGCAGATGATAGTGTTTGGGGGAACAAGGAATTTGTGACTATCTTGCAGCAGGTGGTTGAATTACGCAATGATTACAACCATGCAGGATTCAAAGACAATCCTTTTTCTGCTCAGACGATCATTGGTAGGGTAGAGCAACTACTGGATGGAATTGAGGATGTCTTGTCTGAGATATAGGATTTGGTAGCATCATTTTAAATGGTTTTAGGGGCTGTTTAAAGTGGTGCTTTTGTTTTGTGGAGTATTGGGATGGTTGATGTTTGTGAAGAGGTGTTAATACCAAGAGCATATTTACTTAGATATTTAAGAATAATTGGCTTGCATATCTCGAAAAATAGTCGTACCTTTGCACTCGCTAATAAAAAGTTAATTTTCGGTTAAGAAAGGTAAAAAATTGTTTAGCTGAGTTCTTTAACTTATTGATAATCAGAATAGTCTTATAAGGCCGA # Right flank : CTAACTGCTCTGTAGATATCAAATATTTTAAACGGGAATCTCAAAGCGAGTGGTGGCGCATCTTTTCCTCTACAAGGTTCATGCTGGGCAACATTAAAGATGCTCTTAAATAAAAGAGTGAGGTTTAAAAGTGAGGTTAAGATGCGCAGTTTATATTGCCATATAAGCTTCTACAGAGAAAGTTTATAATCTTTGGAAATGCCGGCAAGGATGCGTTGTCTGCCGCTTTGATGGGATTTTTATGCCTGACGGTTTGAGTTTCTCTGCTTCTAGTTCATAATTCTCTCGTTTTTCTGAGGTGGGAATAGCTATTAGTTACTTATACTGGAACCTGTTCAATTGTGTCTGCAGTGTGGACGCAATAGCATAAGTTCGGTAAAATTGACGATTTAATTCCAGTTGTCTTTTTACAAAGTCTTATCTATACTTTTGTAGGGTAGCGTTGTTTAGAATTTCAATCTTGTTTTTGGCTTTAGATAGGATCGTATTGTCTTGAAAGT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGACCATCGTCCACTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //