Array 1 689491-689758 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AVOL01000003.1 Vibrio parahaemolyticus 3259 vp3259.contig.2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
    689491	    28	 100.0	    32	............................	TTGAGGTAATTTGATGTTATGAACCGCTTTCA	
    689551	    28	  96.4	    32	............T...............	TTTTTTCCAAGAACGATTGGAACGACGTTTAG	
    689611	    28	 100.0	    32	............................	AATCTGAAAACCTCTTGCTAAACCAGACATTT	
    689671	    28	  96.4	    32	...........T................	GGGATTCGATGAAGCTTGCATCAAAAGCAATT	
    689731	    28	  96.4	     0	...........T................	|                               	
==========	======	======	======	============================	================================	==================
         5	    28	  97.8	    32	GTTAACTGCCACACAGGCAGCTTAGAAA	                                	       

# Left flank :   CGAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAGAGAATTGAACGCGATATGCAGAAAAAAGCTGAGCTTTGGGCGACTGAATCTGGCAGGTCTCTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAGACCAAACAACGTTCACCCGATAAGAGCAGTAGATTCCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAACTTAATCAACAAGGCAGTCTGGGAACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTTAAAATAGGCTTAAAATACATAGAGTTACAATTGATGGTGTTTAACAAGGTAGAAACATGATTTTTATCTTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTAT
# Right flank :  AGATCACAGTTTCATCAGCGAGTAGAAGAGCAGCAATTGGAGCTGGATTAAACAAAGGTCCCTTTTAAAGAGCTCACACAAATTCACCTTCTTTAGAAGGTGGTTATATACATAATACATGAGTCTGAATTTATGGTAAGTTTAACTCGCTTAGATCTGTTACAAATAGTAAAGTGTTAATTACTCGTAATGTTGACTCGTCTGGTTTCATAGCAAAAGCGCGTTTGTATGATGTTGCGGCTAAGTAGGTTTTGCCCTCAACTTCAGCGATTTTGCCAGCGATGATGTTACTGAACCAAGACTCTCGTATGTTTACAGCTTTTGTTAATAGAGTTTTAGTGTTGCTCAAGTCATCTCTATCGAAGGAACAGACCGCAAGAGCTTCGTAATATATAGGAGCATGGAGCTCATCTCTTATACTCAACAAACTATCATACATCTCCTTTAGCTCGTTGTCTGGAATTGCGAACGGCTGGATTGAGTTAAGAATTTTAGCGGAA

# Questionable array : NO	 Score: 5.87
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTAACTGCCACACAGGCAGCTTAGAAA
# Alternate repeat :   GTTAACTGCCATACAGGCAGCTTAGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.57%AT]
# 	Reference repeat match prediction:         F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.20,-8.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [1-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0.37   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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