Array 1 423369-424676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEQI010000002.1 Salmonella sp. 32020501-2019-00050 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 423369 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 423430 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 423491 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 423552 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 423613 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 423674 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 423735 29 100.0 32 ............................. TAACCATGGCTAAGAAAAAAACTTACAGGACT 423796 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 423857 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 423918 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 423979 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 424040 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 424101 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 424162 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 424223 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 424284 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 424345 29 100.0 32 ............................. CTCCCCCGCCTGATAATTACGCCATCTGCAAT 424406 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 424467 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 424528 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 424589 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 424649 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441346-443430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEQI010000002.1 Salmonella sp. 32020501-2019-00050 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 441346 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 441407 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 441468 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 441529 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 441590 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 441651 29 100.0 32 ............................. GCTGAAGCGCCAGGATACCCTGAAACGCTACC 441712 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 441773 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 441834 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 441895 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 441956 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 442017 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 442078 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 442139 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 442200 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 442261 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 442322 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 442383 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 442444 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 442505 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 442566 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 442627 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 442688 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 442749 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 442810 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 442871 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 442932 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 442993 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 443054 29 100.0 74 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCATGTGTTCCCCGCGCCAGTTCTTCAGCTGGCAACGACAGAATGC 443157 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 443218 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 443279 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 443340 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 443401 29 96.6 0 ......G...................... | A [443428] ========== ====== ====== ====== ============================= ========================================================================== ================== 34 29 99.8 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //