Array 1 39943-40110 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV834014.1 Streptococcus sp. HMSC072G02 Scaffold132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39943 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 40009 36 100.0 30 .................................... AACATTAGCCTTTTCTAACTCTTCAGCTGT 40075 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : AGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAACTAAAGATATTGACTCCCTGCAGGATA # Right flank : CTTTTATTGGTTTTCTAAGTGCTCGACCATCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAACCATTCGAAACAGCACAGCTCTAAAACTAAGTAACAAGACAGACTTGAAACTGTTAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGTTTTAACATTAAATCACGTCTTAAATAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTACCGCAATAAGATCACCAATGTTGTTTGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTATCGCTCAAGCATTCGTATTTGTTTTGGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGCCCCGTTTTCTAGCACTCGTGTAAAAATGTTTTGGAACCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 40634-40334 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV834014.1 Streptococcus sp. HMSC072G02 Scaffold132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 40633 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 40567 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 40501 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 40435 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 40369 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CAGCTCTAAAACATTTCCAGTAAGTTCAAATTTAACAAATGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCAACCACCGCCGCATAATCGAAATCATCCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTACCGATTAGAACATCATCTAAGGTAATCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGAACAAGATGTAGATATGAAATTAACATTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAAATAAAAGCCATAATAATAATGGCTACTAGTTTTGGAACCATTCGAAACAGCACAGCTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATATGTTCCACTCTATGAATTTAGGCTCAT # Right flank : TTAACAGTTTCAAGTCTGTCTTGTTACTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAACCATTCGAAACAGCACAGCTCTAAAACGATGGTCGAGCACTTAGAAAACCAATAAAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACAGCTGAAGAGTTAGAAAAGGCTAATGTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGTTTTAACATTAAATCACGTCTTAAATAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTATCCTGCAGGGAGTCAATATCTTTAGTTTGTTTTGGAACCATTCGAAACAGCACAGCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 40858-41157 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV834014.1 Streptococcus sp. HMSC072G02 Scaffold132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 40858 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 40924 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 40990 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 41056 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 41122 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CAGCTCTAAAACAGTTTTAACATTAAATCACGTCTTAAATAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTACCGCAATAAGATCACCAATGTTGTTTGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTATCGCTCAAGCATTCGTATTTGTTTTGGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGCCCCGTTTTCTAGCACTCGTGTAAAAATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATGAGCCTAAATTCATAGAGTGGAACATATGTTTTGGAACCATTCGAAACAGCACAGCTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAGTAGCCATTATTATTATGGCTTTTATTT # Right flank : CACATAACGTTCAAAAGTTTCCACTAATAGCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTACTTGACGAATTGAAGATGACGGAATTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTTTTACCAATGCTTCCATATCGCTTATATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 41315-41482 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV834014.1 Streptococcus sp. HMSC072G02 Scaffold132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41315 36 88.9 30 NNNN................................ TACTTGACGAATTGAAGATGACGGAATTTA 41381 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 41447 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 96.3 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATGGTTCCAAAACTAGTAGCCATTATTATTATGGCTTTTATTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAATGTTAATTTCATATCTACATCTTGTTCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGATTACCTTAGATGATGTTCTAATCGGTAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGGATGATTTCGATTATGCGGCGGTGGTTGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACATTTGTTAAATTTGAACTTACTGGAAATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACATAACGTTCAAAAGTTTCCACTAATAGCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //