Array 1 3807015-3806253 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051384.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM 24355 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3807014 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 3806953 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 3806892 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 3806831 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 3806770 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 3806709 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 3806648 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 3806587 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 3806526 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 3806465 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 3806404 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 3806343 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 3806282 29 100.0 0 ............................. | A [3806255] ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3826009-3823560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051384.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM 24355 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3826008 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 3825947 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 3825886 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 3825825 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 3825764 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 3825703 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 3825642 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 3825581 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 3825520 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 3825459 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 3825398 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 3825337 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 3825276 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 3825215 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 3825154 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 3825093 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 3825032 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 3824971 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 3824910 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 3824849 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 3824788 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 3824727 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 3824666 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 3824563 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 3824502 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 3824441 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 3824380 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 3824319 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 3824258 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 3824197 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 3824136 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 3824075 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 3824014 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 3823953 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 3823892 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 3823831 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 3823770 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 3823709 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 3823648 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 3823587 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 40 29 99.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //